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SCNpilot_expt_1000_bf_scaffold_9338_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9338_curated_1
unknown

Not on your lists

comp(2..103)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_2
unknown

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comp(100..294)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_3
unknown

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comp(654..902)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_4
unknown

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comp(903..1136)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1449..1757
DNA (309bp) protein (103aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIX1_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK67141.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9338_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1792..2814
DNA (1023bp) protein (341aa)
alr; putative alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alanine racemase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIX0_9SPHN
SCNpilot_expt_1000_bf_scaffold_9338_curated_7
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3026..3928
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HYS4_9SPHN
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_1000_bf_scaffold_9338_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4096..4830
DNA (735bp) protein (245aa)
DNA repair protein RecO n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ85_9SPHN
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9338_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5442..5921
DNA (480bp) protein (160aa)
leuB; 3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-isopropylmalate dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ84_9SPHN
SCNpilot_expt_1000_bf_scaffold_9338_curated_10
unknown

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6706..7044
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_11
unknown

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7044..7175
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9338_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7235..8440
DNA (1206bp) protein (402aa)
metB; cystathionine gamma-synthase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
Cystathionine gamma-synthase {ECO:0000313|EMBL:BAK67251.1}; EC=2.5.1.48 {ECO:0000313|EMBL:BAK67251.1};; EC=4.4.1.11 {ECO:0000313|EMBL:BAK67251.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cystathionine gamma-synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ81_9SPHN
SCNpilot_expt_1000_bf_scaffold_9338_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8847..9239
DNA (393bp) protein (131aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ79_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:BAK67249.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 13 items

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