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SCNpilot_expt_1000_bf_scaffold_2569_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2569_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..498)
DNA (498bp) protein (166aa)
NAD-dependent formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
NAD-dependent formate dehydrogenase alpha subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU4_9SPHN
NAD-dependent formate dehydrogenase alpha subunit {ECO:0000313|EMBL:BAK65966.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(458..1276)
DNA (819bp) protein (273aa)
NAD-dependent formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
NAD-dependent formate dehydrogenase alpha subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU4_9SPHN
NAD-dependent formate dehydrogenase alpha subunit {ECO:0000313|EMBL:BAK65966.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1266..1832)
DNA (567bp) protein (189aa)
mobA; putative molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
Molybdenum cofactor guanylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU5_9SPHN
SCNpilot_expt_1000_bf_scaffold_2569_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1829..3370)
DNA (1542bp) protein (514aa)
NAD-dependent formate dehydrogenase beta subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU6_9SPHN
NAD-dependent formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit
NAD-dependent formate dehydrogenase beta subunit {ECO:0000313|EMBL:BAK65968.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3370..3804)
DNA (435bp) protein (145aa)
NAD-dependent formate dehydrogenase gamma subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU7_9SPHN
NAD-dependent formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
NAD-dependent formate dehydrogenase gamma subunit {ECO:0000313|EMBL:BAK65969.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4000..4476)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQU8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65970.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4553..4786)
DNA (234bp) protein (78aa)
Redox protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H806_9SPHN
Redox protein {ECO:0000313|EMBL:EZP72790.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2569_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4767..6149)
DNA (1383bp) protein (461aa)
GTPase Der n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV0_9SPHN
engA; GTP-binding protein EngA; K03977 GTP-binding protein
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6303..7634)
DNA (1332bp) protein (444aa)
Putative PQQ enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV1_9SPHN
putative PQQ enzyme
Putative PQQ enzyme {ECO:0000313|EMBL:BAK65973.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7660..8364)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65974.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8442..9314)
DNA (873bp) protein (291aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV3_9SPHN
SCNpilot_expt_1000_bf_scaffold_2569_curated_12
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9422..9646)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2DJX8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETI65205.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2569_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9772..10332)
DNA (561bp) protein (187aa)
RNA polymerase sigma factor for flagellar operon FliA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV4_9SPHN
fliA; RNA polymerase sigma factor for flagellar operon FliA; K02405 RNA polymerase sigma factor for flagellar operon FliA
RNA polymerase sigma factor for flagellar operon FliA {ECO:0000313|EMBL:BAK65976.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_2569_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10658..10924)
DNA (267bp) protein (89aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQV5_9SPHN
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:BAK65977.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 14 items

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