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SCNpilot_expt_1000_bf_scaffold_7608_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7608_curated_1
Pseudoalteromonas sp. OCN003, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1289)
DNA (1287bp) protein (429aa)
TonB-dependent receptor n=1 Tax=Pseudoalteromonas haloplanktis ANT/505 RepID=F3BIV1_PSEHA
TonB-dependent receptor {ECO:0000313|EMBL:AIY64461.1}; TaxID=1348114 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas sp. OCN003.;"
btuB; vitamin B12 transporter btuB
SCNpilot_expt_1000_bf_scaffold_7608_curated_2
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1751..2290
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IQB1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB14040.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7608_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2300..3196)
DNA (897bp) protein (299aa)
Peptidase M23 family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN9_9SPHN
peptidase M23 family protein
Peptidase M23 family protein {ECO:0000313|EMBL:BAK64909.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3243..3599)
DNA (357bp) protein (119aa)
xseA; exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN8_9SPHN
SCNpilot_expt_1000_bf_scaffold_7608_curated_5
unknown

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3803..3934
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7608_curated_6
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3947..4375
DNA (429bp) protein (143aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_7608_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4709..5992
DNA (1284bp) protein (428aa)
purD; phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN7_9SPHN
SCNpilot_expt_1000_bf_scaffold_7608_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6062..7393)
DNA (1332bp) protein (444aa)
Putative hemolysin n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKC8_9SPHN
putative hemolysin
Putative hemolysin {ECO:0000313|EMBL:BAK64991.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7524..8204
DNA (681bp) protein (227aa)
OmpA family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKC9_9SPHN
OmpA family protein
OmpA family protein {ECO:0000313|EMBL:BAK64992.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8354..8974)
DNA (621bp) protein (207aa)
MarC family integral membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKE4_9SPHN
MarC family integral membrane protein; K05595 multiple antibiotic resistance protein
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8971..9627)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKE3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65006.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9702..10304)
DNA (603bp) protein (201aa)
folD; methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKE2_9SPHN
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7608_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10613..10885)
DNA (273bp) protein (91aa)
UPF0235 protein SLG_03290 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKE1_9SPHN
hypothetical protein; K09131 hypothetical protein
UPF0235 protein SLG_03290 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 13 items

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