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SCNpilot_expt_1000_bf_scaffold_8068_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8068_curated_1
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..177)
DNA (177bp) protein (59aa)
putative oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADPH) small subunit {ECO:0000313|EMBL:ABF53847.1}; EC=1.4.1.13 {ECO:0000313|EMBL:ABF53847.1};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Glutamate synthase (NADPH) small subunit n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GR75_SPHAL
SCNpilot_expt_1000_bf_scaffold_8068_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(751..1560)
DNA (810bp) protein (270aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
bacA; UDP-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
UDP pyrophosphate phosphatase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A98B56
SCNpilot_expt_1000_bf_scaffold_8068_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1626..2066)
DNA (441bp) protein (147aa)
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 9 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK8_9SPHN
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 9 {ECO:0000313|EMBL:BAK67601.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2042..2578)
DNA (537bp) protein (179aa)
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 9 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK8_9SPHN
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 9 {ECO:0000313|EMBL:BAK67601.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2777..4492)
DNA (1716bp) protein (572aa)
Efflux pump inner membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK7_9SPHN
efflux pump inner membrane protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Efflux pump inner membrane protein {ECO:0000313|EMBL:BAK67600.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4489..5688)
DNA (1200bp) protein (400aa)
Efflux pump inner membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK7_9SPHN
efflux pump inner membrane protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Efflux pump inner membrane protein {ECO:0000313|EMBL:BAK67600.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_7
unknown

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6150..6320
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8068_curated_8
unknown

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6492..7046
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8068_curated_9
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7054..8643)
DNA (1590bp) protein (530aa)
amine oxidase; K00274 monoamine oxidase [EC:1.4.3.4]
Flavin monoamine oxidase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K1V3_9SPHN
Flavin monoamine oxidase {ECO:0000313|EMBL:EQB30529.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8699..9136)
DNA (438bp) protein (146aa)
Putative alcohol dehydrogenase cytochrome c subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K9_9SPHN
Putative alcohol dehydrogenase cytochrome c subunit {ECO:0000313|EMBL:EGD59016.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
putative cytochrome c
SCNpilot_expt_1000_bf_scaffold_8068_curated_11
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..9758)
DNA (495bp) protein (165aa)
Endonuclease n=1 Tax=Sphingobium ummariense RL-3 RepID=T0INV6_9SPHN
Endonuclease {ECO:0000313|EMBL:EQB30530.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
endoribonuclease L-PSP; K07567 TdcF protein
SCNpilot_expt_1000_bf_scaffold_8068_curated_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10368..10868
DNA (501bp) protein (167aa)
Endoribonuclease L-PSP n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K8_9SPHN
Endoribonuclease L-PSP {ECO:0000313|EMBL:EGD59017.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
endoribonuclease L-PSP; K07567 TdcF protein
SCNpilot_expt_1000_bf_scaffold_8068_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10930..11370)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN6_9SPHN
hypothetical protein; K09128 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67438.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11367..11549)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN5_9SPHN
hypothetical protein; K09123 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67437.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_15
RIFOXYA2_FULL_Elusimicrobia_69_6_curated, Elusimicrobia, Bacteria

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12018..12242
DNA (225bp) protein (75aa)
Tax=RIFOXYA2_FULL_Elusimicrobia_69_6_curated
SCNpilot_expt_1000_bf_scaffold_8068_curated_16
unknown

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12272..12736
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8068_curated_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12723..13658)
DNA (936bp) protein (312aa)
Two component LuxR family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K7_9SPHN
Two-component response regulator {ECO:0000313|EMBL:GAO53878.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8068_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13651..15300)
DNA (1650bp) protein (550aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K6_9SPHN
Signal transduction histidine kinase {ECO:0000313|EMBL:GAO53879.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_8068_curated_19
Acetobacter cibinongensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15548..16000)
DNA (453bp) protein (151aa)
cytochrome C n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237E262
Cytochrome c {ECO:0000313|EMBL:GAN61409.1}; TaxID=1231339 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter cibinongensis 4H-1.;"
cytochrome c
SCNpilot_expt_1000_bf_scaffold_8068_curated_20
Komagataeibacter europaeus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16003..17253)
DNA (1251bp) protein (417aa)
D-amino acid oxidase n=1 Tax=Gluconacetobacter europaeus RepID=UPI00036D7D0A
D-amino acid oxidase {ECO:0000313|EMBL:GAN97639.1}; TaxID=1234669 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter europaeus NBRC 3261.;"
D-amino acid oxidase
SCNpilot_expt_1000_bf_scaffold_8068_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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comp(17399..17995)
DNA (597bp) protein (199aa)
Putative aldo/keto reductase family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FEX6_SORC5
Aldo/keto reductase {ECO:0000313|EMBL:AIE86926.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
aldo/keto reductase
Displaying 21 items

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