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SCNpilot_expt_1000_bf_scaffold_13018_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13018_curated_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..372
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL39_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39126.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein; K03743
SCNpilot_expt_1000_bf_scaffold_13018_curated_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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465..977
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVE4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19283.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13018_curated_3
unknown

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1790..1984
DNA (195bp) protein (65aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQY2_9SPHN
SCNpilot_expt_1000_bf_scaffold_13018_curated_4
unknown

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comp(2262..2471)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13018_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2608..3585)
DNA (978bp) protein (326aa)
thiamine pyrophosphate enzyme; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN83_9SPHN
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:BAK65531.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_13018_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3600..3971)
DNA (372bp) protein (124aa)
thiamine pyrophosphate enzyme; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN83_9SPHN
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:BAK65531.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_13018_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4336..5394
DNA (1059bp) protein (353aa)
Peptidase C13 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLH9_9GAMM
MORN repeat family protein {ECO:0000313|EMBL:GAO54997.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Peptidase C13 family
SCNpilot_expt_1000_bf_scaffold_13018_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5853..6029)
DNA (177bp) protein (59aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN84_9SPHN
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65532.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_13018_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6026..6349)
DNA (324bp) protein (108aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN84_9SPHN
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65532.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_13018_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6654..8966)
DNA (2313bp) protein (771aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMR7_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67856.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_13018_curated_11
unknown

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9400..9693
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13018_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10271..10636
DNA (366bp) protein (122aa)
glgP; glycogen phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1]
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphorylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN85_9SPHN
Displaying 12 items

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