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SCNpilot_expt_1000_bf_scaffold_26550_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_26550_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..733)
DNA (732bp) protein (244aa)
Na(+)/H(+) antiporter NhaA 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=NHAA1_NOVAD
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
Na(+)/H(+) antiporter NhaA 1 {ECO:0000255|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA 1 {ECO:0000255|HAMAP-Rule:MF_01844}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1212..1916)
DNA (705bp) protein (235aa)
Isochorismatase hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6M6_NOVAD
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:KHS49014.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2206..2604
DNA (399bp) protein (133aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI8_9SPHN
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65051.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2929..3027
DNA (99bp) protein (33aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI7_9SPHN
hypothetical protein; K09922 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65050.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3276..3770)
DNA (495bp) protein (165aa)
ruvC; crossover junction endodeoxyribonuclease RuvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI5_9SPHN
SCNpilot_expt_1000_bf_scaffold_26550_curated_6
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3795..4145)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W2X0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14668.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_26550_curated_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4145..4483)
DNA (339bp) protein (113aa)
Probable transcriptional regulatory protein Sphch_2863 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ETS1_SPHCR
hypothetical protein
Probable transcriptional regulatory protein BV95_03871 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_8
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4647..4874
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2A0_MAGSA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE52025.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_1000_bf_scaffold_26550_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5143..5454
DNA (312bp) protein (104aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Caulobacter crescentus OR37 RepID=R0ENC4_CAUCE
Peptidase M20:Peptidase dimerisation {ECO:0000313|EMBL:GAO54839.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 9 items

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