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SCNpilot_expt_1000_bf_scaffold_5245_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5245_curated_1
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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159..332
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V9E3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ05199.1}; TaxID=314232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_2
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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348..638
DNA (291bp) protein (97aa)
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
SCNpilot_expt_1000_bf_scaffold_5245_curated_3
Pyrococcus horikoshii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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648..1022
DNA (375bp) protein (125aa)
Putative uncharacterized protein PH0308 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58046_PYRHO
Putative uncharacterized protein PH0308 {ECO:0000313|EMBL:BAA29381.1}; TaxID=70601 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /; NBRC 100139 / OT-3).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5245_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1113..1772)
DNA (660bp) protein (220aa)
Lysophospholipase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM66_9SPHN
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:BAK65321.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1840..2529
DNA (690bp) protein (230aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM65_9SPHN
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK65320.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_6
unknown

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comp(2510..2812)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5245_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4046..4729
DNA (684bp) protein (228aa)
Putative ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM64_9SPHN
putative ABC transporter permease; K02004 putative ABC transport system permease protein
Putative ABC transporter permease protein {ECO:0000313|EMBL:BAK65319.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4675..5007
DNA (333bp) protein (111aa)
ABC transporter permease n=1 Tax=Sphingobium xenophagum RepID=UPI0003648344
ABC transporter, permease protein, putative {ECO:0000313|EMBL:CCW17887.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
putative ABC transporter permease; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5245_curated_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5106..6188)
DNA (1083bp) protein (361aa)
penicillin-binding protein 1A n=1 Tax=Sphingomonas elodea RepID=UPI0002630700
Putative penicillin-binding protein {ECO:0000313|EMBL:GAM01226.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
penicillin-binding protein 1A family
SCNpilot_expt_1000_bf_scaffold_5245_curated_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7145..8230)
DNA (1086bp) protein (362aa)
Iron-uptake factor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RYQ8_9SPHN
iron-uptake factor
Iron-uptake factor {ECO:0000313|EMBL:AGH47803.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_11
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8230..8667)
DNA (438bp) protein (146aa)
TonB-denpendent receptor n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BFB1
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_5245_curated_12
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8609..10408)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6A8_9SPHN
TonB-dependent receptor
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_1000_bf_scaffold_5245_curated_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10555..11388)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10480.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5245_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..13134)
DNA (1530bp) protein (510aa)
Sulfate transporter family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILT0_9SPHN
sulfate transporter family protein
Sulfate transporter family protein {ECO:0000313|EMBL:BAK67673.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13224..13835)
DNA (612bp) protein (204aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Carbonic anhydrase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS9_9SPHN
SCNpilot_expt_1000_bf_scaffold_5245_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14162..14977)
DNA (816bp) protein (272aa)
putative citrate lyase subunit beta; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Putative citrate lyase beta chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRU2_9SPHN
Putative citrate lyase beta chain {ECO:0000313|EMBL:BAK66158.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15087..16055
DNA (969bp) protein (323aa)
Protein QmcA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRU1_9SPHN
qmcA; protein QmcA
Protein QmcA {ECO:0000313|EMBL:BAK66157.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..16516
DNA (465bp) protein (155aa)
NfeD family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRU0_9SPHN
NfeD family protein; K07340 hypothetical protein
NfeD family protein {ECO:0000313|EMBL:BAK66156.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5245_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16488..17588)
DNA (1101bp) protein (367aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030ECB71
Membrane protein {ECO:0000313|EMBL:AJP73888.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative MscS family transporter
Displaying 19 items

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