ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5241_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5241_curated_1
unknown

Not on your lists

2..100
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5241_curated_2
unknown

Not on your lists

532..687
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5241_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

709..2058
DNA (1350bp) protein (450aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILM5_9SPHN
miaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_1000_bf_scaffold_5241_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2058..2492
DNA (435bp) protein (145aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILM6_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK67619.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2686..3726
DNA (1041bp) protein (347aa)
Rod shape-determining protein MreB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILM8_9SPHN
mreB; rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins
Rod shape-determining protein MreB {ECO:0000313|EMBL:BAK67621.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3902..5134
DNA (1233bp) protein (411aa)
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 PF8_9SPHN">RepID=G2IPF8_9SPHN
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:AKH43101.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative esterase
SCNpilot_expt_1000_bf_scaffold_5241_curated_7
unknown

Not on your lists

comp(5172..5945)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5241_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6560..7153
DNA (594bp) protein (198aa)
Phosphate starvation-inducible protein PhoH n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILN0_9SPHN
phosphate starvation-inducible protein PhoH; K06217 phosphate starvation-inducible protein PhoH and related proteins
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:BAK67623.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7146..7676
DNA (531bp) protein (177aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Endoribonuclease YbeY n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILN1_9SPHN
putative metalloprotease; K07042 probable rRNA maturation factor
SCNpilot_expt_1000_bf_scaffold_5241_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7695..8624
DNA (930bp) protein (310aa)
Magnesium and cobalt transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILN2_9SPHN
magnesium and cobalt transporter
Magnesium and cobalt transporter {ECO:0000313|EMBL:BAK67625.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8771..9085)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILN3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67626.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9530..9871)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILN4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67627.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5241_curated_13
unknown

Not on your lists

comp(10604..10705)
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 13 items

View Taxonomy