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SCNpilot_expt_1000_bf_scaffold_10980_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10980_curated_1
Sphingobium wenxiniae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(565..1269)
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B38F53
CatI {ECO:0000313|EMBL:AHZ46839.1}; TaxID=595605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium wenxiniae (strain DSM 21828 / JZ-1).;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1284..1811)
DNA (528bp) protein (176aa)
Putative ABC transporter substrate binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS45_9SPHN
putative ABC transporter substrate binding protein; K01989 putative ABC transport system substrate-binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAK66205.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2272..3105)
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67477.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3405..4358
DNA (954bp) protein (318aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KEQ53823.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KEQ53823.1};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F257_SPHCR
SCNpilot_expt_1000_bf_scaffold_10980_curated_5
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4212..5009)
DNA (798bp) protein (266aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2A6_SPHCR
CysB family transcriptional regulator {ECO:0000313|EMBL:AJR23241.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
LysR family transcriptional regulator; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator
SCNpilot_expt_1000_bf_scaffold_10980_curated_6
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5266..5691)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F251_SPHCR
3-keto-5-aminohexanoate cleavage protein {ECO:0000313|EMBL:AJR23227.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10980_curated_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5980..6246
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AX61_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD02470.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_8
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6324..6890
DNA (567bp) protein (189aa)
Carboxymuconolactone decarboxylase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F258_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR23221.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_10980_curated_9
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7131..7454)
DNA (324bp) protein (108aa)
Thioesterase superfamily protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F252_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR23226.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
thioesterase superfamily protein
SCNpilot_expt_1000_bf_scaffold_10980_curated_10
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7673..8671
DNA (999bp) protein (333aa)
taurine catabolism dioxygenase tauD/tfdA; K06912 alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-]
Taurine catabolism dioxygenase TauD/TfdA n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2B5_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR26179.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8671..10302
DNA (1632bp) protein (544aa)
Acetolactate synthase {ECO:0000313|EMBL:KEQ53838.1}; EC=2.2.1.6 {ECO:0000313|EMBL:KEQ53838.1};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
acetolactate synthase (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2B6_SPHCR
SCNpilot_expt_1000_bf_scaffold_10980_curated_12
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10764..11468)
DNA (705bp) protein (235aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2B7_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR23233.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_10980_curated_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11585..12091)
DNA (507bp) protein (169aa)
Transcriptional regulator, LacI family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2B9_SPHCR
LacI family transcriptional regulator {ECO:0000313|EMBL:AJR26178.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
Displaying 13 items

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