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SCNpilot_expt_1000_bf_scaffold_5007_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5007_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..484)
DNA (483bp) protein (161aa)
pckA; phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT9_9SPHN
SCNpilot_expt_1000_bf_scaffold_5007_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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746..1453
DNA (708bp) protein (236aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT8_9SPHN
OmpR family two-component system response regulator; K14981 two-component system, OmpR family, response regulator ChvI
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK66154.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1422..3053
DNA (1632bp) protein (544aa)
two-component system sensor histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT7_9SPHN
SCNpilot_expt_1000_bf_scaffold_5007_curated_4
unknown

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comp(3253..3423)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5007_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3556..4395
DNA (840bp) protein (280aa)
UPF0042 nucleotide-binding protein SLG_14760 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT5_9SPHN
putative P-loop-containing ATPase; K06958 UPF0042 nucleotide-binding protein
Nucleotide-binding protein SLG_14760 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4401..4805
DNA (405bp) protein (135aa)
PTS system transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system IIA component {ECO:0000313|EMBL:BAK66150.1}; EC=2.7.1.69 {ECO:0000313|EMBL:BAK66150.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PTS system IIA component n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT4_9SPHN
SCNpilot_expt_1000_bf_scaffold_5007_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4802..5092
DNA (291bp) protein (97aa)
Phosphocarrier protein HPr n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT3_9SPHN
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein
Phosphocarrier protein HPr {ECO:0000313|EMBL:BAK66149.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5178..5981
DNA (804bp) protein (268aa)
RNA methyltransferase {ECO:0000313|EMBL:BAK66148.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK66148.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRT2_9SPHN
RNA methyltransferase; K03437 RNA methyltransferase, TrmH family
SCNpilot_expt_1000_bf_scaffold_5007_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5997..7127)
DNA (1131bp) protein (377aa)
Chemotaxis protein MotB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX4_9SPHN
motB; chemotaxis protein MotB; K02557 chemotaxis protein MotB
Chemotaxis protein MotB {ECO:0000313|EMBL:BAK65996.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7155..8018)
DNA (864bp) protein (288aa)
Chemotaxis protein MotA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX3_9SPHN
motA; chemotaxis protein MotA; K02556 chemotaxis protein MotA
Chemotaxis protein MotA {ECO:0000313|EMBL:BAK65995.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8230..9066)
DNA (837bp) protein (279aa)
Flagellar hook-associated protein 3 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX2_9SPHN
flgL; flagellar hook-associated protein 3; K02397 flagellar hook-associated protein 3 FlgL
Flagellar hook-associated protein 3 {ECO:0000313|EMBL:BAK65994.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5007_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9093..9599)
DNA (507bp) protein (169aa)
Flagellar hook-associated protein 1 FlgK n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQX1_9SPHN
flgK; flagellar hook-associated protein 1 FlgK; K02396 flagellar hook-associated protein 1 FlgK
Flagellar hook-associated protein 1 FlgK {ECO:0000313|EMBL:BAK65993.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 12 items

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