ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7464_curated

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7464_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..502
DNA (501bp) protein (167aa)
nuoJ; NADH-quinone oxidoreductase subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
NADH-quinone oxidoreductase chain J {ECO:0000313|EMBL:BAK66984.1}; EC=1.6.99.5 {ECO:0000313|EMBL:BAK66984.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NADH-quinone oxidoreductase chain J n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II61_9SPHN
SCNpilot_expt_1000_bf_scaffold_7464_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

499..804
DNA (306bp) protein (102aa)
nuoK; NADH-quinone oxidoreductase subunit K; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II60_9SPHN
SCNpilot_expt_1000_bf_scaffold_7464_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

815..2896
DNA (2082bp) protein (694aa)
nuoL; NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
NADH-quinone oxidoreductase chain L {ECO:0000313|EMBL:BAK66982.1}; EC=1.6.99.5 {ECO:0000313|EMBL:BAK66982.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NADH-quinone oxidoreductase chain L n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II59_9SPHN
SCNpilot_expt_1000_bf_scaffold_7464_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2893..4443
DNA (1551bp) protein (517aa)
nuoM; NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
NADH-quinone oxidoreductase chain M {ECO:0000313|EMBL:BAK66981.1}; EC=1.6.99.5 {ECO:0000313|EMBL:BAK66981.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NADH-quinone oxidoreductase chain M n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II58_9SPHN
SCNpilot_expt_1000_bf_scaffold_7464_curated_5
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4744..5769
DNA (1026bp) protein (342aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
nuoN; NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit N n=1 Tax=Sphingobium xenophagum RepID=UPI0002EACF65
SCNpilot_expt_1000_bf_scaffold_7464_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5953..6186
DNA (234bp) protein (78aa)
birA; biotin--protein ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin protein ligase {ECO:0000313|EMBL:BAK66979.1}; EC=6.3.4.15 {ECO:0000313|EMBL:BAK66979.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Biotin protein ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II56_9SPHN
Displaying 6 items

View Taxonomy