ggKbase home page

SCNpilot_expt_1000_bf_scaffold_14105_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_14105_curated_1
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

591..836
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UDX3_ADVKW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK63211.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_expt_1000_bf_scaffold_14105_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(838..1539)
DNA (702bp) protein (234aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
7-cyano-7-deazaguanine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC9_9SPHN
queC; queuosine biosynthesis protein QueC; K06920 queuosine biosynthesis protein QueC
SCNpilot_expt_1000_bf_scaffold_14105_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1709..2125)
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68111.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_14105_curated_4
unknown

Not on your lists

2568..3173
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14105_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3267..3881)
DNA (615bp) protein (205aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ornithine carbamoyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD2_9SPHN
argF; ornithine carbamoyltransferase
SCNpilot_expt_1000_bf_scaffold_14105_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4597..5544
DNA (948bp) protein (316aa)
Ion transporter, putative n=1 Tax=Cronobacter universalis NCTC 9529 RepID=K8DAB6_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CDX50950.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ion transporter
SCNpilot_expt_1000_bf_scaffold_14105_curated_7
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(5528..6046)
DNA (519bp) protein (173aa)
putative acetyltransferase (EC:2.3.1.-); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
serine O-acetyltransferase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288FCC2
SCNpilot_expt_1000_bf_scaffold_14105_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6043..7071)
DNA (1029bp) protein (343aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK68115.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK68115.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD4_9SPHN
putative glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_14105_curated_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7068..8111)
DNA (1044bp) protein (348aa)
Family 2 glycosyl transferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1P7_9SPHN
family 2 glycosyl transferase
Family 2 glycosyl transferase {ECO:0000313|EMBL:AGH48404.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_14105_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8306..8746)
DNA (441bp) protein (147aa)
Beta-lactamase {ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|SAAS:SAAS00063099};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative beta-lactamase class A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPD5_9SPHN
putative beta-lactamase class A
SCNpilot_expt_1000_bf_scaffold_14105_curated_11
unknown

Not on your lists

9006..9200
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 11 items

View Taxonomy