ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6049_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6049_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..233
DNA (231bp) protein (77aa)
Putative bacteriophage N4 adsorption protein B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP6_9SPHN
putative bacteriophage N4 adsorption protein B; K11740 bacteriophage N4 adsorption protein B
Putative bacteriophage N4 adsorption protein B {ECO:0000313|EMBL:BAK67835.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

537..1280
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67834.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1282..2250
DNA (969bp) protein (323aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP4_9SPHN
hypothetical protein; K07090
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67833.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2250..3038
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67832.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3561..4544
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP2_9SPHN
hypothetical protein; K06915
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67831.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4508..4786
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP2_9SPHN
hypothetical protein; K06915
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67831.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4799..5194)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67830.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5200..6075)
DNA (876bp) protein (292aa)
htpX; putative protease HtpX-like protein; K03799 heat shock protein HtpX [EC:3.4.24.-]
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protease HtpX homolog n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP0_9SPHN
SCNpilot_expt_1000_bf_scaffold_6049_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6196..6954)
DNA (759bp) protein (253aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN9_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK67828.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_10
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7146..9137
DNA (1992bp) protein (664aa)
Histidine kinase,histidine kinase,Response regulator receiver domain protein n=1 Tax=Sphingobium sp. AP49 RepID=J2CZ31_9SPHN
Two-component sensor histidine kinase {ECO:0000313|EMBL:GAM97854.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_6049_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9015..9650)
DNA (636bp) protein (212aa)
MatE family transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN8_9SPHN
MatE family transporter
MatE family transporter {ECO:0000313|EMBL:BAK67827.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6049_curated_12
unknown

Not on your lists

10131..10472
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6049_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10499..12025)
DNA (1527bp) protein (509aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Valine--tRNA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMN7_9SPHN
SCNpilot_expt_1000_bf_scaffold_6049_curated_14
unknown

Not on your lists

12264..12494
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 14 items

View Taxonomy