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SCNpilot_expt_1000_bf_scaffold_9105_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9105_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..404)
DNA (402bp) protein (134aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
sigma factor regulator FecR n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003690D7E
Iron dicitrate transport regulator FecR {ECO:0000313|EMBL:AJP72436.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_9105_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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455..1336
DNA (882bp) protein (294aa)
sugar isomerase (SIS); K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
N-acetylmuramic acid-6-phosphate etherase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003683A14
Putative sugar phosphate isomerase {ECO:0000313|EMBL:KEZ14762.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_1000_bf_scaffold_9105_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1344..3419)
DNA (2076bp) protein (692aa)
peptidase S9 prolyl oligopeptidase active site domain-containing protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3A7
Peptidase S9 {ECO:0000313|EMBL:AJP73054.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase S9 prolyl oligopeptidase active site domain-containing protein
SCNpilot_expt_1000_bf_scaffold_9105_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3549..4586)
DNA (1038bp) protein (346aa)
beta-lactamase; K01066 esterase / lipase [EC:3.1.1.-]
esterase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373AF86
Esterase {ECO:0000313|EMBL:KEZ14765.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_1000_bf_scaffold_9105_curated_5
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4583..4696)
DNA (114bp) protein (38aa)
Permease n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IM09_9SPHN
Permease {ECO:0000313|EMBL:KGB58587.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_expt_1000_bf_scaffold_9105_curated_6
unknown

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5220..5483
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9105_curated_7
unknown

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5714..5869
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9105_curated_8
unknown

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6508..6987
DNA (480bp) protein (160aa)

This feature has no annotations

Displaying 8 items

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