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SCNpilot_expt_1000_bf_scaffold_5926_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5926_curated_1
unknown

Not on your lists

comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5926_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(217..426)
DNA (210bp) protein (70aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Membrane-associated phospholipid phosphatase n=1 Tax=Caulobacter sp. AP07 RepID=J2PHQ8_9CAUL
SCNpilot_expt_1000_bf_scaffold_5926_curated_3
unknown

Not on your lists

1151..1648
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5926_curated_4
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1828..2289)
DNA (462bp) protein (154aa)
Transcriptional regulator, IclR family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5J8_9PROT
Transcriptional regulator, IclR family protein {ECO:0000313|EMBL:EHL97532.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
iclR; IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5926_curated_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2696..3379
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK52_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP66981.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5926_curated_6
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3376..4662
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U0L1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AJC23295.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_5926_curated_7
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4757..5995)
DNA (1239bp) protein (413aa)
UPI0003D5B728 related cluster n=1 Tax=unknown RepID=UPI0003D5B728
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ETI59076.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
putative sodium/dicarboxylate symporter
SCNpilot_expt_1000_bf_scaffold_5926_curated_8
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5992..6987)
DNA (996bp) protein (332aa)
mandelate racemase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035F2231
Mandelate racemase {ECO:0000313|EMBL:KGB56229.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
mandelate racemase
SCNpilot_expt_1000_bf_scaffold_5926_curated_9
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6995..8029)
DNA (1035bp) protein (345aa)
UPI0003D59EC0 related cluster n=1 Tax=unknown RepID=UPI0003D59EC0
Uncharacterized protein {ECO:0000313|EMBL:ETI59074.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5926_curated_10
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8097..8969)
DNA (873bp) protein (291aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HIE4_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:EQB12782.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5926_curated_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9121..9885)
DNA (765bp) protein (255aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
SCNpilot_expt_1000_bf_scaffold_5926_curated_12
unknown

Not on your lists

comp(10173..10460)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5926_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10872..11681)
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68090.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11720..13039)
DNA (1320bp) protein (440aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68089.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13203..14429)
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68088.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14426..14932)
DNA (507bp) protein (169aa)
Putative transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA6_9SPHN
putative transporter; K01991 polysaccharide export outer membrane protein
Putative transporter {ECO:0000313|EMBL:BAK68087.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15253..16848
DNA (1596bp) protein (532aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68086.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17051..18313
DNA (1263bp) protein (421aa)
Putative glucosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA4_9SPHN
putative glucosyltransferase
Putative glucosyltransferase {ECO:0000313|EMBL:BAK68085.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18668..19879
DNA (1212bp) protein (404aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA3_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68084.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20287..22065
DNA (1779bp) protein (593aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68083.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22172..22762)
DNA (591bp) protein (197aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA1_9SPHN
TonB-dependent receptor-like protein; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68082.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5926_curated_22
unknown

Not on your lists

23140..23355
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 22 items

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