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SCNpilot_expt_1000_bf_scaffold_7889_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7889_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..201)
DNA (201bp) protein (67aa)
pntB; nicotinamide nucleotide transhydrogenase subunit beta PntB; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS86_9SPHN
SCNpilot_expt_1000_bf_scaffold_7889_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(198..413)
DNA (216bp) protein (72aa)
pntAB; nicotinamide nucleotide transhydrogenase subunit alpha 2 PntAB; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Nicotinamide nucleotide transhydrogenase alpha subunit 2 PntAB {ECO:0000313|EMBL:BAK66247.1}; EC=1.6.1.2 {ECO:0000313|EMBL:BAK66247.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nicotinamide nucleotide transhydrogenase alpha subunit 2 PntAB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS87_9SPHN
SCNpilot_expt_1000_bf_scaffold_7889_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(661..1788)
DNA (1128bp) protein (376aa)
pntAA; nicotinamide nucleotide transhydrogenase subunit alpha 1 PntAA; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Nicotinamide nucleotide transhydrogenase alpha subunit 1 PntAA {ECO:0000313|EMBL:BAK66248.1}; EC=1.6.1.2 {ECO:0000313|EMBL:BAK66248.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD(P) transhydrogenase subunit alpha n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS88_9SPHN
SCNpilot_expt_1000_bf_scaffold_7889_curated_4
unknown

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comp(1817..1939)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7889_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2112..3560
DNA (1449bp) protein (483aa)
Putative NtrC family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS89_9SPHN
putative NtrC family two-component system response regulator
Putative NtrC family two-component system response regulator {ECO:0000313|EMBL:BAK66249.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7889_curated_6
unknown

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comp(3567..3809)
DNA (243bp) protein (81aa)
ATPase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289AEF4
putative ATPase
SCNpilot_expt_1000_bf_scaffold_7889_curated_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3845..6088)
DNA (2244bp) protein (748aa)
putative ATPase (EC:3.6.1.- 3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
ATPase n=1 Tax=Sphingobium baderi LL03 RepID=T0HX54_9SPHN
ATPase {ECO:0000313|EMBL:EQB02139.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_7889_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6173..8152)
DNA (1980bp) protein (660aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
parE; DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS90_9SPHN
SCNpilot_expt_1000_bf_scaffold_7889_curated_9
unknown

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8617..9231
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Eimeria praecox RepID=U6H0E0_9EIME
SCNpilot_expt_1000_bf_scaffold_7889_curated_10
unknown

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comp(9293..9496)
DNA (204bp) protein (68aa)
WGS project CABT00000000 data, contig 2.597 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) RepID=F7WD08_SORMK
SCNpilot_expt_1000_bf_scaffold_7889_curated_11
unknown

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comp(10626..10886)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7889_curated_12
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10892..11236
DNA (345bp) protein (115aa)
Integrase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H8H4_9SPHN
Integrase {ECO:0000313|EMBL:EQB12656.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
phage integrase
SCNpilot_expt_1000_bf_scaffold_7889_curated_13
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11181..11453)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GYL6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR09890.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
Displaying 13 items

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