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SCNpilot_expt_1000_bf_scaffold_6605_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6605_curated_1
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1334)
DNA (1332bp) protein (444aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, organellar chromatophore-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A61E
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_6605_curated_2
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1339..1878)
DNA (540bp) protein (180aa)
serine O-acetyltransferase; K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4H0_DESAT
Serine O-acetyltransferase {ECO:0000313|EMBL:ADH86445.1}; TaxID=589865 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2).;"
SCNpilot_expt_1000_bf_scaffold_6605_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1869..3350)
DNA (1482bp) protein (494aa)
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM1_9SPHN
SCNpilot_expt_1000_bf_scaffold_6605_curated_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3350..3484)
DNA (135bp) protein (45aa)
aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EXY6_SPHCR
SCNpilot_expt_1000_bf_scaffold_6605_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3659..5578)
DNA (1920bp) protein (640aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM3_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK66733.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6605_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5606..6730
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66734.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6605_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6712..7188
DNA (477bp) protein (159aa)
putative Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative Holliday junction resolvase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM5_9SPHN
SCNpilot_expt_1000_bf_scaffold_6605_curated_8
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7185..7454
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VN49_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU09458.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6605_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7489..8478
DNA (990bp) protein (330aa)
pyrB; aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Aspartate carbamoyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM7_9SPHN
SCNpilot_expt_1000_bf_scaffold_6605_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8469..9167
DNA (699bp) protein (233aa)
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITM8_9SPHN
Dihydroorotase {ECO:0000313|EMBL:BAK66738.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 10 items

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