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SCNpilot_expt_1000_bf_scaffold_536_curated

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_536_curated_1
unknown

Not on your lists

3..155
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_536_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158..418
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM93_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65348.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

429..662
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035C30E7
Uncharacterized protein {ECO:0000313|EMBL:KEZ17144.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_1000_bf_scaffold_536_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

659..1165
DNA (507bp) protein (169aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Lysozyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM92_9SPHN
lysozyme
SCNpilot_expt_1000_bf_scaffold_536_curated_5
unknown

Not on your lists

1165..1665
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_536_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2108..2992
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM86_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65341.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3093..4277
DNA (1185bp) protein (395aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK65340.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK65340.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM85_9SPHN
putative glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_536_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4873..6132
DNA (1260bp) protein (420aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM84_9SPHN
putative aromatic acid transporter; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK65339.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6151..7188
DNA (1038bp) protein (346aa)
putative hydrolase; K14333 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46]
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM83_9SPHN
Putative hydrolase {ECO:0000313|EMBL:BAK65338.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7199..7654
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM82_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65337.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7920..9419
DNA (1500bp) protein (500aa)
ATP-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B41A74
Uncharacterized protein {ECO:0000313|EMBL:GAO55643.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase; K06915
SCNpilot_expt_1000_bf_scaffold_536_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9775..10677)
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM78_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65333.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10808..12301
DNA (1494bp) protein (498aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM76_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK65331.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12383..13363
DNA (981bp) protein (327aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM75_9SPHN
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:BAK65330.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13592..15430
DNA (1839bp) protein (613aa)
hypothetical protein; K01007 pyruvate, water dikinase [EC:2.7.9.2]
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM74_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65329.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15441..16493
DNA (1053bp) protein (351aa)
hypothetical protein; K01007 pyruvate, water dikinase [EC:2.7.9.2]
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM73_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65328.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16494..16970
DNA (477bp) protein (159aa)
Biotin carboxyl carrier protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM72_9SPHN
biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:BAK65327.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17112..18476
DNA (1365bp) protein (455aa)
biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Biotin carboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM71_9SPHN
Biotin carboxylase {ECO:0000313|EMBL:BAK65326.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18479..19948
DNA (1470bp) protein (490aa)
putative carboxyltransferase; K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3]
Putative carboxyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM70_9SPHN
Putative carboxyltransferase {ECO:0000313|EMBL:BAK65325.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19965..20813
DNA (849bp) protein (283aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM69_9SPHN
putative hydrolase; K02566 NagD protein
Putative hydrolase {ECO:0000313|EMBL:BAK65324.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21313..21960
DNA (648bp) protein (216aa)
Putative methyltransferase {ECO:0000313|EMBL:BAK65323.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK65323.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM68_9SPHN
putative methyltransferase
SCNpilot_expt_1000_bf_scaffold_536_curated_22
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22369..22788
DNA (420bp) protein (140aa)
glyoxalase n=1 Tax=Sphingomonas wittichii RepID=UPI00037083C6
glyoxalase/bleomycin resistance protein/dioxygenase; K07032
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABQ69126.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_536_curated_23
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(22876..23286)
DNA (411bp) protein (137aa)
Putative cytoplasmic protein n=1 Tax=Patulibacter medicamentivorans RepID=H0EAS2_9ACTN
Putative cytoplasmic protein {ECO:0000313|EMBL:EHN09247.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
putative enzyme of the cupin superfamily
SCNpilot_expt_1000_bf_scaffold_536_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23333..24106)
DNA (774bp) protein (258aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH41519.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_536_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24158..24550)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3Z6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41518.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_536_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24864..25718)
DNA (855bp) protein (285aa)
protocatechuate 4,5-dioxygenase subunit beta; K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase beta chain {ECO:0000313|EMBL:BAK64855.1}; EC=1.13.11.8 {ECO:0000313|EMBL:BAK64855.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protocatechuate 4,5-dioxygenase beta chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI5_9SPHN
SCNpilot_expt_1000_bf_scaffold_536_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25718..26119)
DNA (402bp) protein (134aa)
protocatechuate 4,5-dioxygenase subunit alpha; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase alpha chain {ECO:0000313|EMBL:BAK64854.1}; EC=1.13.11.8 {ECO:0000313|EMBL:BAK64854.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Protocatechuate 4,5-dioxygenase alpha chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI4_9SPHN
SCNpilot_expt_1000_bf_scaffold_536_curated_28
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26537..27016
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED1_SPHWW
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABQ70647.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_536_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27098..27997
DNA (900bp) protein (300aa)
Alpha-ketoglutarate-dependent taurine dioxygenase {ECO:0000313|EMBL:AKH42962.1}; EC=1.14.11.17 {ECO:0000313|EMBL:AKH42962.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein n=1 Tax=Psychrobacter lutiphocae RepID=UPI000377C043
putative alpha-ketoglutarate-dependent taurine dioxygenase
SCNpilot_expt_1000_bf_scaffold_536_curated_30
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28540..31020
DNA (2481bp) protein (827aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3I1_9SPHN
TonB-dependent receptor-like protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
Displaying items 1-30 of 115 in total

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