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SCNpilot_expt_1000_bf_scaffold_313_curated

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Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_313_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1021
DNA (1020bp) protein (340aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR80_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68446.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1099..1764)
DNA (666bp) protein (222aa)
Putative phosphatase n=1 Tax=Sphingopyxis sp. MC1 PF0_9SPHN">RepID=N9UPF0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE56673.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
HAD superfamily hydrolase
SCNpilot_expt_1000_bf_scaffold_313_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1761..2450)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR79_9SPHN
hypothetical protein; K06997
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68445.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2473..3081
DNA (609bp) protein (203aa)
putative thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Putative thiamine-phosphate pyrophosphorylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR78_9SPHN
Putative thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:BAK68444.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3318..4064)
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR77_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68443.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4331..4783
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR76_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68442.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4834..7359
DNA (2526bp) protein (842aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR75_9SPHN
SCNpilot_expt_1000_bf_scaffold_313_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7359..7844
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR74_9SPHN
hypothetical protein; K03643 LPS-assembly lipoprotein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68440.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7870..8853
DNA (984bp) protein (328aa)
holA; putative DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
Putative DNA polymerase III subunit delta {ECO:0000313|EMBL:BAK68439.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK68439.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative DNA polymerase III subunit delta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR73_9SPHN
SCNpilot_expt_1000_bf_scaffold_313_curated_10
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8931..9470)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IQB1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB14040.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_313_curated_11
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9918..13076
DNA (3159bp) protein (1053aa)
TonB-dependent receptor n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70B73
TonB-dependent receptor {ECO:0000313|EMBL:EAQ27882.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
btuB; vitamin B12 transporter btuB
SCNpilot_expt_1000_bf_scaffold_313_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13163..15742)
DNA (2580bp) protein (860aa)
ATPase AAA n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IKM6_9SPHN
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_expt_1000_bf_scaffold_313_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15963..17702)
DNA (1740bp) protein (580aa)
ggt; gamma-glutamyltranspeptidase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:BAK64832.1}; EC=2.3.2.2 {ECO:0000313|EMBL:BAK64832.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Gamma-glutamyltranspeptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG2_9SPHN
SCNpilot_expt_1000_bf_scaffold_313_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17878..19680
DNA (1803bp) protein (601aa)
Long-chain fatty-acid--CoA ligase {ECO:0000313|EMBL:BAK64831.1}; EC=6.2.1.3 {ECO:0000313|EMBL:BAK64831.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Long-chain fatty-acid--CoA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG1_9SPHN
long-chain fatty-acid--CoA ligase
SCNpilot_expt_1000_bf_scaffold_313_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19801..20211)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64906.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_16
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20314..20703)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00036173B2
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:ABC33551.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
SCNpilot_expt_1000_bf_scaffold_313_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20700..21431)
DNA (732bp) protein (244aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN5_9SPHN
gloB; hydroxyacylglutathione hydrolase
SCNpilot_expt_1000_bf_scaffold_313_curated_18
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21459..21890)
DNA (432bp) protein (144aa)
gloA; lactoylglutathione lyase (EC:4.4.1.5); K01759 lactoylglutathione lyase [EC:4.4.1.5]
PREDICTED: lactoylglutathione lyase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14E08
Glyoxalase {ECO:0000313|EMBL:KER36541.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22002..22718
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJN3_9SPHN
hypothetical protein; K09797 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64903.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23045..23938)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJG0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64830.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23943..24698)
DNA (756bp) protein (252aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF9_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK64829.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24769..25848)
DNA (1080bp) protein (360aa)
Peptidase M48 family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF7_9SPHN
peptidase M48 family protein
Peptidase M48 family protein {ECO:0000313|EMBL:BAK64827.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26944)
DNA (1080bp) protein (360aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF6_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK64826.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_24
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27262..29262
DNA (2001bp) protein (667aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Sphingobium indicum B90A RepID=I5BAN1_9SPHN
SCNpilot_expt_1000_bf_scaffold_313_curated_25
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29259..29711
DNA (453bp) protein (151aa)
N-acetyltransferase GCN5; K03827 putative acetyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IEQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08149.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29858..30391
DNA (534bp) protein (178aa)
Translation initiation factor IF-3 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJF0_9SPHN
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30546..32072
DNA (1527bp) protein (509aa)
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cysteine--tRNA ligase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJE8_9SPHN
SCNpilot_expt_1000_bf_scaffold_313_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32065..33018
DNA (954bp) protein (318aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJE7_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK64817.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33280..34992)
DNA (1713bp) protein (571aa)
Sulfate transporter family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJE6_9SPHN
sulfate transporter family protein; K03321 sulfate permease, SulP family
Sulfate transporter family protein {ECO:0000313|EMBL:BAK64816.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_313_curated_30
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34989..35252)
DNA (264bp) protein (88aa)
Transcriptional regulator, XRE family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPX7_METS4
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACA15176.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying items 1-30 of 130 in total

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