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SCNpilot_expt_1000_bf_scaffold_352_curated

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_352_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(180..1082)
DNA (903bp) protein (301aa)
Nitrilase {ECO:0000313|EMBL:BAK66434.1}; EC=3.5.5.1 {ECO:0000313|EMBL:BAK66434.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nitrilase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS4_9SPHN
nitrilase
SCNpilot_expt_1000_bf_scaffold_352_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1079..1672)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66435.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1669..2094)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66436.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2187..3302
DNA (1116bp) protein (372aa)
ald; alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alanine dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS7_9SPHN
SCNpilot_expt_1000_bf_scaffold_352_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3445..3666)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66438.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3756..4235)
DNA (480bp) protein (160aa)
rppH; RNA pyrophosphohydrolase; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA pyrophosphohydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISS9_9SPHN
SCNpilot_expt_1000_bf_scaffold_352_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4401..6272
DNA (1872bp) protein (624aa)
2-oxoglutarate oxidoreductase, alpha subunit {ECO:0000313|EMBL:GAO55672.1}; EC=1.2.7.3 {ECO:0000313|EMBL:GAO55672.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pyruvate flavodoxin/ferredoxin oxidoreductase-like; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3]
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7H6_NOVAD
SCNpilot_expt_1000_bf_scaffold_352_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6269..7330
DNA (1062bp) protein (354aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
2-oxoacid ferredoxin oxidoreductase subunit beta n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B308BE
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:ENY80015.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7703..8695
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRM4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41348.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
membrane-bound metal-dependent hydrolase; K09151 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_352_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8910..10214
DNA (1305bp) protein (435aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST2_9SPHN
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:BAK66442.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10224..12584)
DNA (2361bp) protein (787aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST3_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66443.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_352_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12625..13335)
DNA (711bp) protein (237aa)
Putative metal-dependent hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST4_9SPHN
putative metal-dependent hydrolase; K06896
Putative metal-dependent hydrolase {ECO:0000313|EMBL:BAK66444.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13419..14786
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST6_9SPHN
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14796..15350
DNA (555bp) protein (185aa)
Membrane protein required for colicin V production n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST7_9SPHN
membrane protein required for colicin V production; K03558 membrane protein required for colicin V production
Membrane protein required for colicin V production {ECO:0000313|EMBL:BAK66447.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15340..15804
DNA (465bp) protein (155aa)
NifU-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST8_9SPHN
NifU-like protein
NifU-like protein {ECO:0000313|EMBL:BAK66448.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15797..17602
DNA (1806bp) protein (602aa)
Putative glutathione-regulated potassium-efflux system protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IST9_9SPHN
putative glutathione-regulated potassium-efflux system protein; K11747 glutathione-regulated potassium-efflux system protein KefB
Putative glutathione-regulated potassium-efflux system protein {ECO:0000313|EMBL:BAK66449.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17599..17955
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EV61_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG48811.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17963..19066)
DNA (1104bp) protein (368aa)
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-dehydroquinate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU1_9SPHN
SCNpilot_expt_1000_bf_scaffold_352_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19063..19662)
DNA (600bp) protein (200aa)
aroK; shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Shikimate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU2_9SPHN
SCNpilot_expt_1000_bf_scaffold_352_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19696..19869
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66453.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19878..21722
DNA (1845bp) protein (615aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66454.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21719..22648
DNA (930bp) protein (310aa)
Tyrosine recombinase XerC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU5_9SPHN
xerD; tyrosine recombinase XerD; K04763 integrase/recombinase XerD
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22658..23599
DNA (942bp) protein (314aa)
accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU6_9SPHN
SCNpilot_expt_1000_bf_scaffold_352_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23682..25166
DNA (1485bp) protein (495aa)
Peptidase M48 family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU7_9SPHN
peptidase M48 family protein
Peptidase M48 family protein {ECO:0000313|EMBL:BAK66457.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_25
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25256..25426)
DNA (171bp) protein (57aa)
Putative pilin Flp n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISU8_9SPHN
Component of type 4 pilus pilin subunit protein {ECO:0000313|EMBL:KEQ55301.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative pilin Flp; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_352_curated_26
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25556..25726)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000316ADCE
Uncharacterized protein {ECO:0000313|EMBL:CCW17584.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
putative pilin Flp; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_352_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25808..26224
DNA (417bp) protein (139aa)
CTP pyrophosphohydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV0_9SPHN
CTP pyrophosphohydrolase
CTP pyrophosphohydrolase {ECO:0000313|EMBL:BAK66460.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26238..27086)
DNA (849bp) protein (283aa)
Putative methyltransferase {ECO:0000313|EMBL:BAK66461.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK66461.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV1_9SPHN
putative methyltransferase
SCNpilot_expt_1000_bf_scaffold_352_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27131..27877
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66462.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_352_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27936..28193
DNA (258bp) protein (86aa)
Glutaredoxin 3 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV3_9SPHN
glutaredoxin 3; K03676 glutaredoxin 3
Glutaredoxin 3 {ECO:0000313|EMBL:BAK66463.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying items 1-30 of 88 in total

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