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SCNpilot_expt_1000_bf_scaffold_234_curated

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Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_234_curated_1
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22..876)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJY2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16661.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
putative antirestriction protein
SCNpilot_expt_1000_bf_scaffold_234_curated_2
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1119..1631)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU61_9SPHN
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:KFG89072.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_234_curated_3
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1628..2116)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
Putative nucleotidyltransferase {ECO:0000313|EMBL:KFG89073.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_234_curated_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2337..2666)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16664.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_234_curated_5

Not on your lists

comp(2702..4060)
DNA (1359bp) protein (453aa)
TnpA, transposase n=1 Tax=uncultured bacterium RepID=Q5ZHG0_9BACT
TnpA, transposase {ECO:0000313|EMBL:ADU90902.1}; Transposase {ECO:0000313|EMBL:CAG30881.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase IS4
SCNpilot_expt_1000_bf_scaffold_234_curated_6
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5482..6795
DNA (1314bp) protein (438aa)
D-galactonate transporter n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036F1875
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDZ99526.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
major facilitator superfamily protein; K08194 MFS transporter, ACS family, D-galactonate transporter
SCNpilot_expt_1000_bf_scaffold_234_curated_7
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6871..9807
DNA (2937bp) protein (979aa)
hypothetical protein, partial n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037E6242
Uncharacterized protein {ECO:0000313|EMBL:EQB15083.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_234_curated_8
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9838..10704
DNA (867bp) protein (289aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
Shikimate dehydrogenase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHZ5_9PROT
shikimate dehydrogenase substrate binding domain protein
SCNpilot_expt_1000_bf_scaffold_234_curated_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10763..11413
DNA (651bp) protein (217aa)
TetR family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F5B1C
transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAC52087.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11495..11944
DNA (450bp) protein (150aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase 2; Short=3-dehydroquinase 2;; EC=4.2.1.10;; Type II DHQase 2; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
3-dehydroquinate dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F46C9
SCNpilot_expt_1000_bf_scaffold_234_curated_11
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11941..12144
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HVB4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01444.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_expt_1000_bf_scaffold_234_curated_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12155..14011)
DNA (1857bp) protein (619aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C312
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EKU75926.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_expt_1000_bf_scaffold_234_curated_13
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14084..14902)
DNA (819bp) protein (273aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F0F1AB
SCNpilot_expt_1000_bf_scaffold_234_curated_14
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14895..16115)
DNA (1221bp) protein (407aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VMJ0_POLNA
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABM36868.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16112..16576)
DNA (465bp) protein (155aa)
acyl dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI000374FE29
Acyl dehydratase {ECO:0000313|EMBL:EJL79444.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
monoamine oxidase regulatory protein
SCNpilot_expt_1000_bf_scaffold_234_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16579..16983)
DNA (405bp) protein (135aa)
glyoxalase n=1 Tax=Variovorax paradoxus RepID=UPI00037C1D3E
Uncharacterized protein {ECO:0000313|EMBL:EJL79443.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_234_curated_17
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16980..17960)
DNA (981bp) protein (327aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VMI7_POLNA
SCNpilot_expt_1000_bf_scaffold_234_curated_18
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18035..18913
DNA (879bp) protein (293aa)
Transcriptional regulator, LysR family n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AHH7_BURGB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACR31357.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_19
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19369..19845)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003128FBA
Transposase {ECO:0000313|EMBL:AJR24428.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
transposase
SCNpilot_expt_1000_bf_scaffold_234_curated_20
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19886..20332)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003193EAF
Uncharacterized protein {ECO:0000313|EMBL:AJR24427.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
putative transposase
SCNpilot_expt_1000_bf_scaffold_234_curated_21
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20513..23014
DNA (2502bp) protein (834aa)
ATP-dependent OLD family endonuclease n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7BE
ATP-dependent OLD family endonuclease
ATP-dependent endonuclease of the OLD family-like protein {ECO:0000313|EMBL:ACC79152.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23748..24677
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBU4_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65487.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24677..26785
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBU3_XANP2
Uncharacterized protein {ECO:0000313|EMBL:ABS65486.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_234_curated_24
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27118..29868)
DNA (2751bp) protein (917aa)
Exonuclease V subunit alpha n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJZ3_9SPHN
Exonuclease V subunit alpha {ECO:0000313|EMBL:AJR24199.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
TrwC protein
SCNpilot_expt_1000_bf_scaffold_234_curated_25
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29868..31715)
DNA (1848bp) protein (616aa)
Type IV secretory protein VirD4 n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU71_9SPHN
Conjugal transfer protein TraD {ECO:0000313|EMBL:AJR24200.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
Type IV secretory pathway VirD4 components-like protein
SCNpilot_expt_1000_bf_scaffold_234_curated_26
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31712..32083)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HX04_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16673.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_234_curated_27
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32291..32836)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CT30_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFG90340.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_28
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32949..33146)
DNA (198bp) protein (66aa)
UPI0003CFF6FC related cluster n=1 Tax=unknown RepID=UPI0003CFF6FC
Phage transcriptional regulator AlpA {ECO:0000313|EMBL:KFG90341.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_234_curated_29
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33220..33558)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP80_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFG90342.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_expt_1000_bf_scaffold_234_curated_30
unknown

Not on your lists

33625..33921
DNA (297bp) protein (99aa)

This feature has no annotations

Displaying items 1-30 of 130 in total

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