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SCNpilot_expt_1000_bf_scaffold_622_curated

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Displaying items 1-30 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_622_curated_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45..1928)
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KFN4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32193.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_622_curated_2
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2595..3104)
DNA (510bp) protein (170aa)
Transcriptional regulator, MarR family n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4Y226_ALCXX
Transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AHC47622.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3732..6677)
DNA (2946bp) protein (982aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Z4_NOVAD
TonB-dependent receptor {ECO:0000313|EMBL:KHS46543.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_622_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6756..7829)
DNA (1074bp) protein (358aa)
dienelactone hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B374FB
Uncharacterized protein {ECO:0000313|EMBL:AJP72803.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dienelactone hydrolase
SCNpilot_expt_1000_bf_scaffold_622_curated_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8024..8902
DNA (879bp) protein (293aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XT86_9PROT
SCNpilot_expt_1000_bf_scaffold_622_curated_6
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8943..10235
DNA (1293bp) protein (431aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LIQ9_BURGS
Putative glucarate transporter GudP {ECO:0000313|EMBL:AJK48569.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
Major facilitator superfamily MFS_1
SCNpilot_expt_1000_bf_scaffold_622_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10213..11313
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G800_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26023.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_622_curated_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11413..12078)
DNA (666bp) protein (222aa)
TetR family transcriptional regulator (Fragment) n=1 Tax=Sphingomonas sp. LH128 RepID=J8VFC6_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EZP82783.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_622_curated_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12160..14022)
DNA (1863bp) protein (621aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EG79_9SPHN
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EHJ59768.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_10
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14040..15680)
DNA (1641bp) protein (547aa)
Carboxylic ester hydrolase {ECO:0000256|RuleBase:RU361235}; EC=3.1.1.- {ECO:0000256|RuleBase:RU361235};; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein; K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylesterase type B n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HZA4_9BRAD
SCNpilot_expt_1000_bf_scaffold_622_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16857..18281
DNA (1425bp) protein (475aa)
MatE family transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN2_9SPHN
MatE family transporter; K03327 multidrug resistance protein, MATE family
MatE family transporter {ECO:0000313|EMBL:BAK65095.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18256..19119)
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65094.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19302..19991
DNA (690bp) protein (230aa)
Cell division ATP-binding protein FtsE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN0_9SPHN
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:BAK65093.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19994..20908
DNA (915bp) protein (305aa)
Cell division protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM9_9SPHN
cell division protein; K09811 cell division transport system permease protein
Cell division protein {ECO:0000313|EMBL:BAK65092.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20905..21435
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65091.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21435..22178
DNA (744bp) protein (248aa)
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:BAK65090.1}; EC=2.3.1.51 {ECO:0000313|EMBL:BAK65090.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM7_9SPHN
SCNpilot_expt_1000_bf_scaffold_622_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22350..23114
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65089.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23238..24137
DNA (900bp) protein (300aa)
Glutathione S-transferase {ECO:0000313|EMBL:BAK65087.1}; EC=2.5.1.18 {ECO:0000313|EMBL:BAK65087.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM4_9SPHN
gst; glutathione S-transferase; K11209 GST-like protein
SCNpilot_expt_1000_bf_scaffold_622_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24301..26274
DNA (1974bp) protein (658aa)
AsmA family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM2_9SPHN
AsmA family protein; K07290 hypothetical protein
AsmA family protein {ECO:0000313|EMBL:BAK65085.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_20
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26290..27447)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BUY0_XYLCX
Uncharacterized protein {ECO:0000313|EMBL:ETX14896.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_622_curated_21
Hyphomonas hirschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27792..28262)
DNA (471bp) protein (157aa)
membrane protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B322FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KCZ91926.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas hirschiana VP5.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28716..29222)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJV3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41972.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_622_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29227..30972)
DNA (1746bp) protein (582aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJV4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67312.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31208..32209)
DNA (1002bp) protein (334aa)
Thiamine biosynthesis lipoprotein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE4_9SPHN
Thiamin biosynthesis lipoprotein apbE {ECO:0000313|EMBL:GAO55187.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thiamine biosynthesis lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_1000_bf_scaffold_622_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32304..33155)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68126.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33179..33652)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68127.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33668..34387)
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE7_9SPHN
hypothetical protein; K09939 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68128.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34552..35406
DNA (855bp) protein (285aa)
TonB-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPE8_9SPHN
TonB-like protein; K03832 periplasmic protein TonB
TonB-like protein {ECO:0000313|EMBL:BAK68129.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_622_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35742..38123
DNA (2382bp) protein (794aa)
TonB-dependent siderophore receptor n=1 Tax=Novosphingobium sp. AP12 RepID=J2GGX1_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AJP70747.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
iron complex outermembrane receptor protein; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_622_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38250..38930
DNA (681bp) protein (227aa)
putative hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase SLG_34560 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PKHD-type hydroxylase SLG_34560 n=1 Tax=Sphingobium sp. SYK-6 PF0_9SPHN">RepID=G2IPF0_9SPHN
Displaying items 1-30 of 180 in total

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