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SCNpilot_expt_1000_bf_scaffold_1002_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1002_curated_1
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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545..1825
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H1X0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ05399.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
phage integrase
SCNpilot_expt_1000_bf_scaffold_1002_curated_2
unknown

Not on your lists

1822..2505
DNA (684bp) protein (228aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1002_curated_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2568..2828
DNA (261bp) protein (87aa)
UPI0003CF2C16 related cluster n=1 Tax=unknown RepID=UPI0003CF2C16
Putative transcriptional regulator {ECO:0000313|EMBL:KGJ65706.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
phage transcriptional regulator AlpA; K07733 prophage regulatory protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_4
unknown

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2821..3195
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1002_curated_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3222..4892
DNA (1671bp) protein (557aa)
Integrase n=1 Tax=Pseudomonas phage MP1412 RepID=I6X828_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:KGJ65707.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5402..5854
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H437_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGJ65709.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_7
unknown

Not on your lists

5847..6047
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1002_curated_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6044..7393
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H1N9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGJ65710.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
Terminase-like family
SCNpilot_expt_1000_bf_scaffold_1002_curated_9
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7408..8235
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GSI0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18286.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_10
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8232..8546
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I595_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18287.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_11
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8677..9021
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00037BF0B2
Uncharacterized protein {ECO:0000313|EMBL:EPR18288.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9085..9687
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FF55_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV15897.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9676..10776)
DNA (1101bp) protein (367aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FHW2_9RHIZ
DNA methylase N-4/N-6 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_14
unknown

Not on your lists

10967..11335
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1002_curated_15
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11777..13081
DNA (1305bp) protein (435aa)
Phage integrase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ30_SPHAL
phage integrase
Phage integrase {ECO:0000313|EMBL:ABF54242.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_16
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13140..13883)
DNA (744bp) protein (248aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ29_SPHAL
NADPH-dependent FMN reductase; K11811 arsenical resistance protein ArsH
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABF54243.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_17
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13911..15002)
DNA (1092bp) protein (364aa)
Bile acid:sodium symporter n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ28_SPHAL
bile acid:sodium symporter; K03325 arsenite transporter, ACR3 family
Bile acid:sodium symporter {ECO:0000313|EMBL:ABF54244.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14999..15433)
DNA (435bp) protein (145aa)
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Arsenate reductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ27_SPHAL
SCNpilot_expt_1000_bf_scaffold_1002_curated_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15430..15969)
DNA (540bp) protein (180aa)
Protein tyrosine phosphatase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ26_SPHAL
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ABF54246.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15966..16319)
DNA (354bp) protein (118aa)
Transcriptional regulator, ArsR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ25_SPHAL
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABF54247.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16405..16773)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE55942.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17117..19567)
DNA (2451bp) protein (817aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPY4_SPHAL
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABF54288.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_1002_curated_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19766..20110)
DNA (345bp) protein (115aa)
UPI0003D66C10 related cluster n=1 Tax=unknown RepID=UPI0003D66C10
Uncharacterized protein {ECO:0000313|EMBL:ETI62694.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1002_curated_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20122..22155)
DNA (2034bp) protein (678aa)
UPI0003D66E57 related cluster n=1 Tax=unknown RepID=UPI0003D66E57
Cation transporter {ECO:0000313|EMBL:ETI62693.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
heavy metal efflux pump CzcA; K07239 heavy-metal exporter, HME family
Displaying 24 items

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