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SCNpilot_expt_1000_bf_scaffold_27_curated

Search features with annotation key words

Displaying items 1-30 of 489 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_27_curated_1
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1087)
DNA (1086bp) protein (362aa)
Conjugation TrbI-like protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ8_9SPHN
Conjugation TrbI-like protein {ECO:0000313|EMBL:EAT08742.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_27_curated_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1087..2097)
DNA (1011bp) protein (337aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ9_9SPHN
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:EAT08741.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_expt_1000_bf_scaffold_27_curated_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2094..2777)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILW3_9SPHN
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EQB03096.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_27_curated_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2784..4124)
DNA (1341bp) protein (447aa)
P-type conjugative transfer protein TrbL n=2 Tax=Sphingomonas wittichii RepID=A5VCM7_SPHWW
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ABQ70043.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_27_curated_5
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4121..4528)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSJ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02933.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..5261)
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium baderi LL03 RepID=T0HZJ4_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EQB02934.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer protein TrbJ
SCNpilot_expt_1000_bf_scaffold_27_curated_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5258..7747)
DNA (2490bp) protein (830aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG1_9SPHN
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB02935.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer ATPase TrbE
SCNpilot_expt_1000_bf_scaffold_27_curated_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7744..8025)
DNA (282bp) protein (94aa)
Conjugal transfer protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS8_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB02936.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_27_curated_9
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8022..8390)
DNA (369bp) protein (123aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI8_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB02937.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer protein TrbC
SCNpilot_expt_1000_bf_scaffold_27_curated_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8387..9325)
DNA (939bp) protein (313aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK2_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB02938.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_expt_1000_bf_scaffold_27_curated_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9603..10031)
DNA (429bp) protein (143aa)
CopG family transcripitonal regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT3_9SPHN
CopG family transcripitonal regulator {ECO:0000313|EMBL:EQB02941.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_27_curated_12
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10041..12023)
DNA (1983bp) protein (661aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium baderi LL03 RepID=T0GQJ1_9SPHN
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB02942.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer coupling protein TraG
SCNpilot_expt_1000_bf_scaffold_27_curated_13
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12039..13802)
DNA (1764bp) protein (588aa)
Type VI secretion protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK6_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB02943.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_14
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14056..14622)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02944.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14619..15314)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02945.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
lytic transglycosylase subunit
SCNpilot_expt_1000_bf_scaffold_27_curated_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15319..15663)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02946.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15699..16046)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489872
Uncharacterized protein {ECO:0000313|EMBL:EQB02947.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_18
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16027..16605)
DNA (579bp) protein (193aa)
conjugal transfer protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CD3CD
Conjugal transfer protein {ECO:0000313|EMBL:EAT08724.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
Type IV secretory pathway protease TraF-like protein
SCNpilot_expt_1000_bf_scaffold_27_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16602..17189)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02949.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_20
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17320..18084)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00035C9F9C
Uncharacterized protein {ECO:0000313|EMBL:GAJ29141.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18529..19677)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02931.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
phosphoadenosine phosphosulfate reductase
SCNpilot_expt_1000_bf_scaffold_27_curated_22
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19982..20863)
DNA (882bp) protein (294aa)
RepA replication protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSL6_9SPHN
RepA replication protein {ECO:0000313|EMBL:EQB02953.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative replication protein A
SCNpilot_expt_1000_bf_scaffold_27_curated_23
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20860..21126)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02954.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_24
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21260..21832)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUH6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02955.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_25
unknown

Not on your lists

comp(21825..22025)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_27_curated_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22177..22443)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGU4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02956.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22936..23229)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZE8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02874.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_27_curated_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23295..23903)
DNA (609bp) protein (203aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
DNA-methyltransferase n=1 Tax=Sphingobium baderi LL03 RepID=T0HUC0_9SPHN
DNA methylase N-4/N-6 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_27_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24248..24640)
DNA (393bp) protein (131aa)
UPI0003D632DB related cluster n=1 Tax=unknown RepID=UPI0003D632DB
Uncharacterized protein {ECO:0000313|EMBL:AKH43040.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_27_curated_30
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24809..25126)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQE7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02877.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
Displaying items 1-30 of 489 in total

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