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SCNpilot_expt_1000_bf_scaffold_1781_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1781_curated_1
unknown

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1..66
DNA (66bp) protein (22aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1781_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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398..2749
DNA (2352bp) protein (784aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRR9_9SPHN
putative two-component system sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_1781_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2753..3211
DNA (459bp) protein (153aa)
Putative ATPase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS0_9SPHN
putative ATPase; K06925 UPF0079 ATP-binding protein
Putative ATPase {ECO:0000313|EMBL:BAK66136.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3196..4200
DNA (1005bp) protein (335aa)
Putative phosphotransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS1_9SPHN
putative phosphotransferase; K07102
Putative phosphotransferase {ECO:0000313|EMBL:BAK66137.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4197..4922
DNA (726bp) protein (242aa)
Mannose-1-phosphate guanylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS2_9SPHN
mannose-1-phosphate guanylyltransferase
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:BAK66138.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4915..7923
DNA (3009bp) protein (1003aa)
Double-strand break repair protein AddB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS3_9SPHN
addB; double-strand break repair protein AddB
Double-strand break repair protein AddB {ECO:0000313|EMBL:BAK66139.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7916..11413
DNA (3498bp) protein (1166aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Double-strand break repair helicase AddA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS4_9SPHN
addA; double-strand break repair helicase AddA
SCNpilot_expt_1000_bf_scaffold_1781_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11442..11789
DNA (348bp) protein (116aa)
Thioredoxin n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRS5_9SPHN
trxA; thioredoxin; K03671 thioredoxin 1
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_9
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12271..12885)
DNA (615bp) protein (205aa)
30S ribosomal protein S4 n=1 Tax=Sphingobium sp. AP49 RepID=J2D3W0_9SPHN
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_1781_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12991..14187)
DNA (1197bp) protein (399aa)
hypothetical protein; K11941 glucans biosynthesis protein C [EC:2.1.-.-]
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILR0_9SPHN
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67653.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_11
unknown

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comp(14354..14497)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1781_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14584..15312)
DNA (729bp) protein (243aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ9_9SPHN
RNA methyltransferase
SCNpilot_expt_1000_bf_scaffold_1781_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15665..16126)
DNA (462bp) protein (154aa)
Transcriptional repressor NrdR n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ8_9SPHN
nrdR; transcriptional repressor NrdR; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16128..16334)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67650.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16348..17691)
DNA (1344bp) protein (448aa)
glyA; glycine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Serine hydroxymethyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ6_9SPHN
SCNpilot_expt_1000_bf_scaffold_1781_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17694..18161)
DNA (468bp) protein (156aa)
rpiB; ribose 5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:BAK67648.1}; EC=5.3.1.6 {ECO:0000313|EMBL:BAK67648.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ribose 5-phosphate isomerase B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ5_9SPHN
SCNpilot_expt_1000_bf_scaffold_1781_curated_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18297..18464
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2A6_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ66422.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18667..19230)
DNA (564bp) protein (188aa)
Putative Xre family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ0_9SPHN
putative Xre family transcriptional regulator
Putative Xre family transcriptional regulator {ECO:0000313|EMBL:BAK67643.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19328..19822
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILP9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67642.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1781_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20044..20277
DNA (234bp) protein (78aa)
purS; phosphoribosylformylglycinamidine synthase subunit PurS; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
Phosphoribosylformylglycinamidine synthase PurS n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILP7_9SPHN
SCNpilot_expt_1000_bf_scaffold_1781_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20298..20972
DNA (675bp) protein (225aa)
purQ; phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=627192 species=
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILP6_9SPHN
SCNpilot_expt_1000_bf_scaffold_1781_curated_22
unknown

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comp(21270..21473)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1781_curated_23
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21473..22960)
DNA (1488bp) protein (496aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
Catalase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QMU1_9BURK
SCNpilot_expt_1000_bf_scaffold_1781_curated_24
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23658..24080
DNA (423bp) protein (141aa)
Phage DNA recombinase n=9 Tax=Acetobacter pasteurianus RepID=C7JDE9_ACEP3
DNA recombinase {ECO:0000313|EMBL:KKC26181.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
phage DNA recombinase
Displaying 24 items

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