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SCNpilot_expt_1000_bf_scaffold_445_curated

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Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_445_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

231..1457
DNA (1227bp) protein (409aa)
Conjugation TrbI family protein n=2 Tax=Sphingobium RepID=F6F475_SPHCR
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AJR26653.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1461..2465
DNA (1005bp) protein (335aa)
Type IV secretory pathway VirB11 component n=3 Tax=Sphingobium RepID=D4YY60_SPHJU
P-type DNA transfer ATPase VirB11; K03196 type IV secretion system protein VirB11
Type IV secretory pathway VirB11 component {ECO:0000313|EMBL:BAI95292.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_expt_1000_bf_scaffold_445_curated_3
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2449..4413
DNA (1965bp) protein (655aa)
Type IV secretory pathway VirD4 component n=2 Tax=Sphingobium RepID=G2IU25_9SPHN
virD4; type IV secretory pathway VirD4 component; K03205 type IV secretion system protein VirD4
Type IV secretory pathway VirD4 component {ECO:0000313|EMBL:EIM68969.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4403..5287
DNA (885bp) protein (295aa)
DNA transfer TraO-like protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F472_SPHCR
DNA transfer TraO-like protein
DNA transfer TraO-like protein {ECO:0000313|EMBL:AEG51731.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5325..6563)
DNA (1239bp) protein (413aa)
RES domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BUP2_NITHN
RES domain-containing protein
RES domain protein {ECO:0000313|EMBL:ADE13442.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_445_curated_6
unknown

Not on your lists

comp(6642..7481)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WYL8_METML
SCNpilot_expt_1000_bf_scaffold_445_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7546..8526)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000379FAF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK10258.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_445_curated_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8684..9310
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035CA243
Uncharacterized protein {ECO:0000313|EMBL:AHE53733.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_445_curated_9
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9368..9571)
DNA (204bp) protein (68aa)
Uncharacterized protein n=3 Tax=Sphingomonadaceae RepID=G2IU37_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM68976.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9836..10885)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F466_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51725.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10878..11486)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F465_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51724.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11654..12775)
DNA (1122bp) protein (374aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F464_SPHCR
Relaxase/mobilization nuclease family protein
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:AEG51723.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_13
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12768..13328)
DNA (561bp) protein (187aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=F6F463_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51722.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_14
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13535..14482)
DNA (948bp) protein (316aa)
ParB-like partition protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F462_SPHCR
parB-like partition protein; K03497 chromosome partitioning protein, ParB family
ParB-like partition protein {ECO:0000313|EMBL:AEG51721.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_15
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14482..15246)
DNA (765bp) protein (255aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F461_SPHCR
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:AEG51720.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_16
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15259..15435)
DNA (177bp) protein (59aa)
Uncharacterized protein n=4 Tax=Sphingobium RepID=D4YY40_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51719.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15628..16020)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=F6F459_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51718.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_18
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16394..16630
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=I5BA16_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIM66418.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_445_curated_19
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16769..17290)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F457_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51716.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17398..17562)
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=F6F456_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB19067.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17869..18303
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F455_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51714.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_22
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18379..18786)
DNA (408bp) protein (136aa)
Single-stranded DNA-binding protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F454_SPHCR
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_23
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19194..19862)
DNA (669bp) protein (223aa)
Uncharacterized protein n=6 Tax=Sphingomonadaceae RepID=D4YY32_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51712.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19975..21117)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=6 Tax=Sphingomonadaceae RepID=D4YY31_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK68727.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21264..22004)
DNA (741bp) protein (247aa)
Arylsulfatase-family protein n=7 Tax=Sphingomonadaceae RepID=D4YY30_SPHJU
arylsulfatase-family protein; K11811 arsenical resistance protein ArsH
Arsenic resistance protein ArsH {ECO:0000313|EMBL:EQB19062.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_26
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22004..22435)
DNA (432bp) protein (144aa)
putative acetyltransferase; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1]
Tyrosine phosphatase n=6 Tax=Sphingomonadaceae RepID=Q1NC27_9SPHN
Tyrosine phosphatase {ECO:0000313|EMBL:EQB19061.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22432..23499)
DNA (1068bp) protein (356aa)
Arsenite transporter n=7 Tax=Sphingomonadaceae RepID=D4YY28_SPHJU
arsenite transporter; K03325 arsenite transporter, ACR3 family
Arsenite export protein {ECO:0000313|EMBL:BAK68730.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_28
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23496..23936)
DNA (441bp) protein (147aa)
arsenate reductase (EC:1.20.4.1)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Arsenate reductase n=7 Tax=Sphingomonadaceae RepID=D4YY27_SPHJU
SCNpilot_expt_1000_bf_scaffold_445_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23933..24469)
DNA (537bp) protein (179aa)
Arsenate reductase n=6 Tax=Sphingomonadaceae RepID=D4YY26_SPHJU
putative arsenate reductase
Putative arsenate reductase {ECO:0000313|EMBL:BAK68732.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_445_curated_30
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24482..24820)
DNA (339bp) protein (113aa)
ArsR-family transcriptional regulator n=7 Tax=Sphingomonadaceae RepID=D4YY25_SPHJU
arsR; ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:EQB29855.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Displaying items 1-30 of 72 in total

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