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SCNpilot_expt_1000_bf_scaffold_4647_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4647_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..221)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0P6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41258.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4647_curated_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(296..853)
DNA (558bp) protein (186aa)
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
adenylosuccinate lyase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003127AD2
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_4647_curated_3
unknown

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952..1668
DNA (717bp) protein (239aa)
hypothetical protein id=2306170 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SCNpilot_expt_1000_bf_scaffold_4647_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1719..3002
DNA (1284bp) protein (428aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AKH41199.1}; EC=2.1.1.79 {ECO:0000313|EMBL:AKH41199.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cyclopropane fatty acid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane fatty acid synthase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E967_9SPHN
SCNpilot_expt_1000_bf_scaffold_4647_curated_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3241..5373
DNA (2133bp) protein (711aa)
TonB-dependent receptor-like protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBA9_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:EIZ77418.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_4647_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5397..6089)
DNA (693bp) protein (231aa)
DNA repair protein RadC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIY0_9SPHN
DNA repair protein RadC {ECO:0000313|EMBL:GAD48310.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K03630 DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_4647_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6167..8620
DNA (2454bp) protein (818aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSJ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48309.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4647_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8769..9446
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25756.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9401..9607
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8R6_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHS46582.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9619..10089
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00037F98D1
Uncharacterized protein {ECO:0000313|EMBL:AKH41266.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K09978 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4647_curated_11
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10161..10490
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZJ5_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48946.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_12
unknown

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comp(10556..10798)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4647_curated_13
unknown

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comp(10826..10927)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4647_curated_14
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11093..11305
DNA (213bp) protein (71aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14); K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
F0F1 ATP synthase subunit A n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287A448
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11346..11573
DNA (228bp) protein (76aa)
atpE; ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase C chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II42_9SPHN
ATP synthase subunit C {ECO:0000313|EMBL:AJP71054.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11656..12150
DNA (495bp) protein (165aa)
H+-transporting two-sector ATPase subunit B/B'''' n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A02E
H+-transporting two-sector ATPase subunit B/B'
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12143..12676
DNA (534bp) protein (178aa)
atpF; ATP synthase subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJF2_9SPHN
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_4647_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12830..13438
DNA (609bp) protein (203aa)
NmrA-like family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEB3_9CAUL
Rrf2-linked NADH-flavin reductase {ECO:0000313|EMBL:GAO53694.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TrkA-N; K07118
SCNpilot_expt_1000_bf_scaffold_4647_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13814..14650)
DNA (837bp) protein (279aa)
Hydroxyacylglutathione hydrolase {ECO:0000313|EMBL:AKH41272.1}; EC=3.1.2.6 {ECO:0000313|EMBL:AKH41272.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Hydroxyacylglutathione hydrolase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z878_9SPHN
SCNpilot_expt_1000_bf_scaffold_4647_curated_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14691..15524)
DNA (834bp) protein (278aa)
30S ribosomal protein S1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B39177
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
Displaying 20 items

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