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SCNpilot_expt_1000_bf_scaffold_10035_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10035_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..770)
DNA (768bp) protein (256aa)
Zn-dependent alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:BAK67205.1}; EC=1.1.1.1 {ECO:0000313|EMBL:BAK67205.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Zn-dependent alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ35_9SPHN
SCNpilot_expt_1000_bf_scaffold_10035_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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897..1697
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNY7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50610.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
uspA; universal stress protein UspA
SCNpilot_expt_1000_bf_scaffold_10035_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1980..3458
DNA (1479bp) protein (493aa)
Putative dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK65_9SPHN
Putative FAD-binding dehydrogenase {ECO:0000313|EMBL:AKH42607.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative dehydrogenase
SCNpilot_expt_1000_bf_scaffold_10035_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4177..5832)
DNA (1656bp) protein (552aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:AKH42602.1}; EC=4.2.1.9 {ECO:0000313|EMBL:AKH42602.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQH0_9SPHN
SCNpilot_expt_1000_bf_scaffold_10035_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5866..7278)
DNA (1413bp) protein (471aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK61_9SPHN
4-hydroxybenzoate transporter PcaK {ECO:0000313|EMBL:AKH42601.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative aromatic acid transporter
SCNpilot_expt_1000_bf_scaffold_10035_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7374..8699)
DNA (1326bp) protein (442aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK61_9SPHN
4-hydroxybenzoate transporter PcaK {ECO:0000313|EMBL:AKH42601.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative aromatic acid transporter
SCNpilot_expt_1000_bf_scaffold_10035_curated_7
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8825..9466)
DNA (642bp) protein (214aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC96_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_10035_curated_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9638..10837)
DNA (1200bp) protein (400aa)
putative aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Putative aminotransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7S1_9SPHN
Aminotransferase {ECO:0000313|EMBL:KHK92513.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_10035_curated_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12226..12456
DNA (231bp) protein (77aa)
poly-3-hydroxybutyrate synthase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
poly(R)-hydroxyalkanoic acid synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2EBCB
Poly-3-hydroxybutyrate synthase {ECO:0000313|EMBL:ABC64127.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
Displaying 9 items

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