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SCNpilot_expt_1000_bf_scaffold_3946_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3946_curated_1
unknown

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comp(2..139)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3946_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(631..1059)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A769
Uncharacterized protein {ECO:0000313|EMBL:AKH44101.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3946_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1064..1921)
DNA (858bp) protein (286aa)
Coproporphyrinogen-III oxidase, aerobic {ECO:0000313|EMBL:AKH44100.1}; EC=1.3.3.3 {ECO:0000313|EMBL:AKH44100.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
Coproporphyrinogen III oxidase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZ54_9SPHN
SCNpilot_expt_1000_bf_scaffold_3946_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2045..2755
DNA (711bp) protein (237aa)
Metallophosphoesterase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WHK0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44099.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ICC-like phosphoesterases-like protein; K06953
SCNpilot_expt_1000_bf_scaffold_3946_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2992..3414
DNA (423bp) protein (141aa)
Translation initiation factor IF-3 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPS7_9SPHN
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_expt_1000_bf_scaffold_3946_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3603..5009
DNA (1407bp) protein (469aa)
Putative transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YB41_9SPHN
Putative transporter {ECO:0000313|EMBL:GAD50671.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
anion transporter; K14445 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
SCNpilot_expt_1000_bf_scaffold_3946_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5035..5568)
DNA (534bp) protein (178aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Novosphingobium sp. AP12 RepID=J2PA09_9SPHN
Chaperone protein DnaJ {ECO:0000313|EMBL:AKH44094.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
molecular chaperone DnaJ
SCNpilot_expt_1000_bf_scaffold_3946_curated_8
unknown

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5822..6058
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3946_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6077..6580)
DNA (504bp) protein (168aa)
Putative peptidoglycan-associated lipoprotein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YB37_9SPHN
Putative peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:GAD50666.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
peptidoglycan-associated protein; K03640 peptidoglycan-associated lipoprotein
SCNpilot_expt_1000_bf_scaffold_3946_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6641..7534)
DNA (894bp) protein (298aa)
translocation protein TolB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6B550
Translocation protein TolB {ECO:0000313|EMBL:AKH44091.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tolB; translocation protein TolB; K03641 TolB protein
SCNpilot_expt_1000_bf_scaffold_3946_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7486..8007)
DNA (522bp) protein (174aa)
Protein TolB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP36_9SPHN
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
tolB; translocation protein TolB; K03641 TolB protein
Displaying 11 items

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