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SCNpilot_expt_1000_bf_scaffold_9222_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9222_curated_1
unknown

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190..522
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9222_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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582..1070
DNA (489bp) protein (163aa)
Transcription elongation factor GreB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJJ5_9SPHN
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
GreA/GreB family elongation factor; K04760 transcription elongation factor GreB
SCNpilot_expt_1000_bf_scaffold_9222_curated_3
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1072..1251
DNA (180bp) protein (60aa)
UPI0003CFB353 related cluster n=1 Tax=unknown RepID=UPI0003CFB353
Uncharacterized protein {ECO:0000313|EMBL:ESZ85804.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9222_curated_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1251..1454
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IPK7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK89513.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9222_curated_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2144..2509)
DNA (366bp) protein (122aa)
bdhA; 3-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WKY7_9SPHN
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EIZ80981.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_9222_curated_6
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2515..2907)
DNA (393bp) protein (131aa)
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:CCA94213.1}; EC=1.1.1.30 {ECO:0000313|EMBL:CCA94213.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
3-hydroxybutyrate dehydrogenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIZ5_9SPHN
SCNpilot_expt_1000_bf_scaffold_9222_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3028..3543
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5G0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48351.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9222_curated_8
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3604..4263)
DNA (660bp) protein (220aa)
Outer membrane protein-like n=2 Tax=Novosphingobium RepID=F6IH06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL26054.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9222_curated_9
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4494..5816
DNA (1323bp) protein (441aa)
Fe-S-cluster redox protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0T3_9SPHN
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_9222_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5813..6250)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGY1_9BRAD
Putative HTH-type transcriptional regulator YybR {ECO:0000313|EMBL:AKH41209.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9222_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6619..6879
DNA (261bp) protein (87aa)
FMN-dependent NADH-azoreductase 1 {ECO:0000313|EMBL:AKH41208.1}; EC=1.7.-.- {ECO:0000313|EMBL:AKH41208.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
azoR; FMN-dependent NADH-azoreductase; K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
FMN-dependent NADH-azoreductase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCP0_HYPSM
SCNpilot_expt_1000_bf_scaffold_9222_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7090..7605)
DNA (516bp) protein (172aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKI8_9SPHN
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65051.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9222_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7721..8923
DNA (1203bp) protein (401aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ95_9SPHN
Amidohydrolase {ECO:0000313|EMBL:AKH41206.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_9222_curated_14
unknown

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9170..9280
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9222_curated_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9489..10274
DNA (786bp) protein (262aa)
Putative oxidoreductase protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E966_9SPHN
Oxidoreductase {ECO:0000313|EMBL:KEO92634.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
putative oxidoreductase protein
SCNpilot_expt_1000_bf_scaffold_9222_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10333..11592
DNA (1260bp) protein (420aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AKH41200.1}; EC=2.1.1.79 {ECO:0000313|EMBL:AKH41200.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P731_9SPHN
SCNpilot_expt_1000_bf_scaffold_9222_curated_17
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11745..12266
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N7F5_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:KHL26688.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
Displaying 17 items

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