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SCNpilot_expt_1000_bf_scaffold_3920_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3920_curated_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..655
DNA (654bp) protein (218aa)
tRNA synthetase class II n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6348E
tRNA synthetase, class II (G, H, P and S); K02502 ATP phosphoribosyltransferase regulatory subunit
tRNA synthetase, class II (G, H, P and S) {ECO:0000313|EMBL:ABD27117.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_3920_curated_2
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(807..1715)
DNA (909bp) protein (303aa)
Putative para-nitrobenzyl esterase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SFA1_9BRAD
Putative para-nitrobenzyl esterase {ECO:0000313|EMBL:CCD92878.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
putative para-nitrobenzyl esterase
SCNpilot_expt_1000_bf_scaffold_3920_curated_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1983..3272
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WIP7_9SPHN
SCNpilot_expt_1000_bf_scaffold_3920_curated_4
unknown

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comp(3089..3760)
DNA (672bp) protein (224aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_5
unknown

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comp(4289..4468)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_6
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4930..5475
DNA (546bp) protein (182aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9Y2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO88193.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_7
unknown

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comp(5523..6149)
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_8
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6288..6590
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NCU6_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62495.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_3920_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6776..7426)
DNA (651bp) protein (217aa)
Transcriptional regulator, GntR family n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46NZ3_CUPPJ
Transcriptional regulator of gntR family {ECO:0000313|EMBL:GAO53356.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3920_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7532..8875)
DNA (1344bp) protein (448aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT59_9SPHN
putative aromatic acid transporter; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK66569.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3920_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8892..10478)
DNA (1587bp) protein (529aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IT60_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK66570.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3920_curated_12
unknown

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12059..12448
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B78AA1
SCNpilot_expt_1000_bf_scaffold_3920_curated_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12549..12917
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KA33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33564.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
putative Small Multi-Drug resistant family protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_14
unknown

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comp(12779..13762)
DNA (984bp) protein (328aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14190..14375
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J6G4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33566.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
UbiA prenyltransferase
SCNpilot_expt_1000_bf_scaffold_3920_curated_16
unknown

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14372..14800
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_17
unknown

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14797..16401
DNA (1605bp) protein (535aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3920_curated_18
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16506..17531)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B541B6
Uncharacterized protein {ECO:0000313|EMBL:KFN42532.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17650..18105)
DNA (456bp) protein (152aa)
Putative thiol--disulfide interchange protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQM6_9SPHN
Thioredoxin family protein {ECO:0000313|EMBL:KHS44087.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
thioredoxin family protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18248..19678
DNA (1431bp) protein (477aa)
Argininosuccinate lyase 1 {ECO:0000313|EMBL:AKH42339.1}; EC=4.3.2.1 {ECO:0000313|EMBL:AKH42339.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ARLY_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3920_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19675..19938
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD1120
Uncharacterized protein {ECO:0000313|EMBL:AKH42338.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19941..21215
DNA (1275bp) protein (425aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Diaminopimelate decarboxylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y3T7_9SPHN
SCNpilot_expt_1000_bf_scaffold_3920_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21215..21994
DNA (780bp) protein (260aa)
siroheme synthase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Putative siroheme synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHN8_9SPHN
Siroheme synthase {ECO:0000313|EMBL:AKH42336.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_3920_curated_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22973..23227)
DNA (255bp) protein (85aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQM1_9SPHN
SCNpilot_expt_1000_bf_scaffold_3920_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23424..24566)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NCG0_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH42334.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3920_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24563..25630)
DNA (1068bp) protein (356aa)
Putative permease n=1 Tax=Novosphingobium sp. AP12 RepID=J2GM49_9SPHN
Pheromone autoinducer 2 transporter {ECO:0000313|EMBL:AKH42333.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
permease
SCNpilot_expt_1000_bf_scaffold_3920_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25617..26351)
DNA (735bp) protein (245aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI24_9SPHN
SCNpilot_expt_1000_bf_scaffold_3920_curated_28
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26505..26906)
DNA (402bp) protein (134aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
holo-ACP synthase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WFC4_9SPHN
SCNpilot_expt_1000_bf_scaffold_3920_curated_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27055..27798)
DNA (744bp) protein (248aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9W7_NOVAD
SCNpilot_expt_1000_bf_scaffold_3920_curated_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27803..28384)
DNA (582bp) protein (194aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQL7_9SPHN
Displaying items 1-30 of 31 in total

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