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SCNpilot_expt_1000_bf_scaffold_4068_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4068_curated_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..953
DNA (951bp) protein (317aa)
Outer membrane cobalamin receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AF08_9SPHN
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:EJL30921.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_2
unknown

Not on your lists

comp(1005..1133)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4068_curated_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1345..1815
DNA (471bp) protein (157aa)
AsnC family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QUJ6_BREDI
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGB53438.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4068_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1979..2287)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003199C40
Uncharacterized protein {ECO:0000313|EMBL:AKH43128.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2553..3494
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3E4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AKH43124.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_6
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3608..4303)
DNA (696bp) protein (232aa)
Sel1 domain-containing protein repeat-containing protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E418
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_4068_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4357..5382)
DNA (1026bp) protein (342aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
GTP cyclohydrolase II (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
GTP cyclohydrolase II n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1T5_9SPHN
SCNpilot_expt_1000_bf_scaffold_4068_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5442..6236)
DNA (795bp) protein (265aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:AKH43121.1}; EC=3.1.11.2 {ECO:0000313|EMBL:AKH43121.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
exonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exonuclease III n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8T2_9SPHN
SCNpilot_expt_1000_bf_scaffold_4068_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6629..7285)
DNA (657bp) protein (219aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6C2_9SPHN
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
outer membrane lipoprotein-sorting protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_10
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7358..7525)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B69090
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
SCNpilot_expt_1000_bf_scaffold_4068_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7763..8173)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTJ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48709.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
class I peptide chain release factor domain-containing protein; K15034 ribosome-associated protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_12
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8166..8711)
DNA (546bp) protein (182aa)
Pseudouridine synthase {ECO:0000313|EMBL:EZP80767.1}; EC=5.4.99.- {ECO:0000313|EMBL:EZP80767.1};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
pseudouridylate synthase (EC:4.2.1.70); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5E5_9SPHN
SCNpilot_expt_1000_bf_scaffold_4068_curated_13
Rothia mucilaginosa, Rothia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9352..10131
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Rothia mucilaginosa (strain DY-18) RepID=D2NRI0_ROTMD
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAI64256.1}; TaxID=680646 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia.;" source="Rothia mucilaginosa (strain DY-18) (Stomatococcus mucilaginosus).;"
SCNpilot_expt_1000_bf_scaffold_4068_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10077..11942)
DNA (1866bp) protein (622aa)
Aminodeoxychorismate synthase component 1 {ECO:0000313|EMBL:AKH43115.1}; EC=2.6.1.85 {ECO:0000313|EMBL:AKH43115.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Para-aminobenzoate synthase, component I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
Para-aminobenzoate synthase component I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6B8_9SPHN
SCNpilot_expt_1000_bf_scaffold_4068_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11987..13561
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48705.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K06915
SCNpilot_expt_1000_bf_scaffold_4068_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13656..14699)
DNA (1044bp) protein (348aa)
Osmolarity sensor protein EnvZ {ECO:0000313|EMBL:AKH43112.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH43112.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Sensor histidine kinase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N764_ERYLH
sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_4068_curated_17
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15750..16364)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I4R2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR27070.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
calcium-binding EF-hand protein
SCNpilot_expt_1000_bf_scaffold_4068_curated_18
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16586..17254)
DNA (669bp) protein (223aa)
X-Pro aminopeptidase (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
X-Pro aminopeptidase {ECO:0000313|EMBL:CCA94245.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CCA94245.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
X-Pro aminopeptidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJJ1_9SPHN
SCNpilot_expt_1000_bf_scaffold_4068_curated_19
unknown

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17490..17720
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4068_curated_20
unknown

Not on your lists

17727..18038
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4068_curated_21
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18406..20472
DNA (2067bp) protein (689aa)
oligopeptidase B (EC:3.4.21.83); K01354 oligopeptidase B [EC:3.4.21.83]
Oligopeptidase B n=1 Tax=Sphingomonas sp. LH128 RepID=J8VH38_9SPHN
Oligopeptidase B {ECO:0000313|EMBL:EJU09845.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_4068_curated_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20541..20993
DNA (453bp) protein (151aa)
thioesterase-like protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1R8_9SPHN
Thioesterase-like protein {ECO:0000313|EMBL:KHS44076.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_4068_curated_23
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21004..22719)
DNA (1716bp) protein (572aa)
Diguanylate cyclase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECA7_9SPHN
Diguanylate cyclase {ECO:0000313|EMBL:EHJ61042.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_4068_curated_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22833..23369)
DNA (537bp) protein (179aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
alanine dehydrogenase and pyridine nucleotide transhydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK90_9SPHN
Displaying 24 items

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