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SCNpilot_expt_1000_bf_scaffold_4757_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4757_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..216)
DNA (216bp) protein (72aa)
DNA mismatch repair protein MutS n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVJ3_9SPHN
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_4757_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(330..869)
DNA (540bp) protein (180aa)
DNA mismatch repair protein MutS n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVJ3_9SPHN
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_4757_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1869..3266
DNA (1398bp) protein (466aa)
Malic enzyme {ECO:0000313|EMBL:KHS47674.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KHS47674.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Allosteric NADP-dependent malic enzyme n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G347_NOVAD
SCNpilot_expt_1000_bf_scaffold_4757_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3336..4100)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBB7_NOVAD
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ABD24856.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4757_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4207..4965)
DNA (759bp) protein (253aa)
tRNA (Guanine-N(7)-)-methyltransferase {ECO:0000313|EMBL:AKH43627.1}; EC=2.1.1.33 {ECO:0000313|EMBL:AKH43627.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7M1_9SPHN
SCNpilot_expt_1000_bf_scaffold_4757_curated_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5012..5239)
DNA (228bp) protein (76aa)
Outer membrane receptor for ferrienterochelin and colicin n=1 Tax=Novosphingobium sp. AP12 RepID=J2FZC3_9SPHN
Outer membrane receptor for ferrienterochelin and colicin {ECO:0000313|EMBL:EJL22620.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_4757_curated_7
unknown

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5678..6643
DNA (966bp) protein (322aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4757_curated_8
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7296..7991)
DNA (696bp) protein (232aa)
DNA-binding response regulator CtrA n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5V3_ERYLH
DNA-binding response regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
DNA-binding response regulator CtrA {ECO:0000313|EMBL:ABC64938.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_4757_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8289..9611)
DNA (1323bp) protein (441aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM8_NOVAD
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_4757_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9658..10413)
DNA (756bp) protein (252aa)
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:AKH43631.1}; EC=3.6.3.- {ECO:0000313|EMBL:AKH43631.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM9_NOVAD
SCNpilot_expt_1000_bf_scaffold_4757_curated_11
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10594..11091
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VR58_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP80336.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4757_curated_12
unknown

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comp(12174..12302)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4757_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12389..12925)
DNA (537bp) protein (179aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
inorganic diphosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJR0_9SPHN
SCNpilot_expt_1000_bf_scaffold_4757_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13178..14221
DNA (1044bp) protein (348aa)
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:AKH43635.1}; EC=1.14.14.3 {ECO:0000313|EMBL:AKH43635.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQG6_9SPHN
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4757_curated_15
unknown

Not on your lists

14169..14267
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4757_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14326..15567
DNA (1242bp) protein (414aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5P0_9SPHN
SCNpilot_expt_1000_bf_scaffold_4757_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15654..16724
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ63_9SPHN
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
peptide chain release factor RF-1; K02835 peptide chain release factor 1
SCNpilot_expt_1000_bf_scaffold_4757_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16717..17679
DNA (963bp) protein (321aa)
Release factor glutamine methyltransferase {ECO:0000313|EMBL:AKH43639.1}; EC=2.1.1.- {ECO:0000313|EMBL:AKH43639.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
protein chain release factor methylase subunit; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSU6_9SPHN
SCNpilot_expt_1000_bf_scaffold_4757_curated_19
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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comp(18899..20008)
DNA (1110bp) protein (370aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY13556.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_4757_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20159..21436)
DNA (1278bp) protein (426aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISF2_9SPHN
D-galactonate transporter {ECO:0000313|EMBL:AKH43644.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_4757_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21472..22101)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAW4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS46907.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4757_curated_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22079..22825)
DNA (747bp) protein (249aa)
butyryl-CoA:acetate CoA transferase (EC:2.8.3.8); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
Butyryl-CoA:acetate CoA transferase {ECO:0000313|EMBL:ABD25013.1}; EC=2.8.3.8 {ECO:0000313|EMBL:ABD25013.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Butyryl-CoA:acetate CoA transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAW0_NOVAD
SCNpilot_expt_1000_bf_scaffold_4757_curated_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22825..23739)
DNA (915bp) protein (305aa)
3-oxoacid CoA-transferase subunit A {ECO:0000313|EMBL:KHS43428.1}; EC=2.8.3.5 {ECO:0000313|EMBL:KHS43428.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase, subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAV8_NOVAD
SCNpilot_expt_1000_bf_scaffold_4757_curated_24
unknown

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comp(24039..24797)
DNA (759bp) protein (253aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4757_curated_25
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(24740..24889)
DNA (150bp) protein (50aa)
similar to 26S proteasome regulatory subunit id=24652098 bin=uncultivated_archaeon_J07ABHX67 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=uncultivated_archaeon_J07ABHX67
Uncharacterized protein {ECO:0000313|EMBL:ERG99239.1}; TaxID=1238426 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum sp. J07HQX50.;"
SCNpilot_expt_1000_bf_scaffold_4757_curated_26
Oryza brachyantha, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(24899..25501)
DNA (603bp) protein (201aa)
similar to 26S proteasome regulatory subunit id=24641756 bin=halophilic_archaeon_J07HB67 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=halophilic_archaeon_J07HB67
Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G22140.1}; TaxID=4533 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza brachyantha.;"
similar to C terminal region of A.pernix orf (BAA81491)
SCNpilot_expt_1000_bf_scaffold_4757_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25646..26356
DNA (711bp) protein (237aa)
Putative ATPase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYA6_9SPHN
Putative ATPase {ECO:0000313|EMBL:GAD47513.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cell division cycle protein; K13525 transitional endoplasmic reticulum ATPase
SCNpilot_expt_1000_bf_scaffold_4757_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26389..27621)
DNA (1233bp) protein (411aa)
signal transduction histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHT2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47512.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Displaying 28 items

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