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SCNpilot_expt_1000_bf_scaffold_5825_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5825_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..344)
DNA (342bp) protein (114aa)
Putative di-/tripeptide transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF8_9SPHN
Putative di-/tripeptide transporter {ECO:0000313|EMBL:GAD48772.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
di-tripeptide ABC transporter-like protein; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_1000_bf_scaffold_5825_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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557..898
DNA (342bp) protein (114aa)
Transcriptional regulator, GntR family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P990_9SPHN
HTH-type transcriptional repressor YtrA {ECO:0000313|EMBL:AKH43201.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
GntR family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_5825_curated_3
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1073..1351
DNA (279bp) protein (93aa)
transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00030C059C
Integration host factor subunit beta; K05788 integration host factor subunit beta
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_5825_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1418..2917)
DNA (1500bp) protein (500aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEF2_NOVAD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABP64313.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_5825_curated_5
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4586..4864)
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
SCNpilot_expt_1000_bf_scaffold_5825_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5324..5641
DNA (318bp) protein (106aa)
MFS transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6AE66
Hexuronate transporter {ECO:0000313|EMBL:AKH42582.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_5825_curated_7
Gordonia otitidis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5638..6654
DNA (1017bp) protein (339aa)
Putative monooxygenase n=1 Tax=Gordonia otitidis NBRC 100426 RepID=H5THA5_9ACTO
Putative monooxygenase {ECO:0000313|EMBL:GAB32863.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
para-nitrophenol 4-monooxygenase
SCNpilot_expt_1000_bf_scaffold_5825_curated_8
bacterium YEK0313, Bacteria

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6859..7647
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DLS5_BRAJP
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase {ECO:0000313|EMBL:CEJ13069.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5825_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7644..8972)
DNA (1329bp) protein (443aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP31_9SPHN
putative aromatic acid transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK65670.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5825_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8995..9885
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP32_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43198.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5825_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10012..11244
DNA (1233bp) protein (411aa)
Beta-lactamase {ECO:0000313|EMBL:AKH43197.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AKH43197.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH7_9SPHN
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_5825_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11268..11660
DNA (393bp) protein (131aa)
pcaC; 4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH6_9SPHN
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:AKH43196.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_5825_curated_13
unknown

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comp(11573..11878)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5825_curated_14
unknown

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comp(12241..12435)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5825_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12532..13284
DNA (753bp) protein (251aa)
Diacetyl reductase {ECO:0000313|EMBL:AKH43194.1}; EC=1.1.1.304 {ECO:0000313|EMBL:AKH43194.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LinC-like SDR-family protein; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
LinC-like SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH3_9SPHN
SCNpilot_expt_1000_bf_scaffold_5825_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13290..14435
DNA (1146bp) protein (382aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH2_9SPHN
Penicillin-binding protein 4 {ECO:0000313|EMBL:AKH43193.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_5825_curated_17
unknown

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comp(14966..15157)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5825_curated_18
unknown

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comp(15170..15523)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5825_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15620..16069
DNA (450bp) protein (150aa)
Dehydrosqualene desaturase {ECO:0000313|EMBL:AKH43192.1}; EC=1.3.8.2 {ECO:0000313|EMBL:AKH43192.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH1_9SPHN
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5825_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16066..16287
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66680.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_5825_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16328..17116
DNA (789bp) protein (263aa)
Levodione reductase {ECO:0000313|EMBL:AKH43190.1}; EC=1.1.1.- {ECO:0000313|EMBL:AKH43190.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LinC-like SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITG9_9SPHN
LinC-like SDR-family protein
SCNpilot_expt_1000_bf_scaffold_5825_curated_22
unknown

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comp(17863..18021)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5825_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18248..18490)
DNA (243bp) protein (81aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISJ6_9SPHN
Transcriptional activator NphR {ECO:0000313|EMBL:AKH43186.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5825_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19288..20181)
DNA (894bp) protein (298aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:AKH43185.1}; EC=1.1.1.31 {ECO:0000313|EMBL:AKH43185.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
3-hydroxyisobutyrate dehydrogenase-related protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH8_9SPHN
3-hydroxyisobutyrate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_5825_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..20987)
DNA (810bp) protein (270aa)
N-acyl homoserine lactonase {ECO:0000313|EMBL:AKH43184.1}; EC=3.1.1.81 {ECO:0000313|EMBL:AKH43184.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH9_9SPHN
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_5825_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21010..22170)
DNA (1161bp) protein (387aa)
Biotin biosynthesis cytochrome P450 {ECO:0000313|EMBL:AKH43183.1}; EC=1.14.15.12 {ECO:0000313|EMBL:AKH43183.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative cytochrome P450 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI0_9SPHN
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_5825_curated_27
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22265..23161)
DNA (897bp) protein (299aa)
Putative quorum-quenching lactonase YtnP {ECO:0000313|EMBL:AKH43182.1}; EC=3.1.1.- {ECO:0000313|EMBL:AKH43182.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI1_9SPHN
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_5825_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23188..24888)
DNA (1701bp) protein (567aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:AKH43181.1}; EC=1.1.99.- {ECO:0000313|EMBL:AKH43181.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI2_9SPHN
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_5825_curated_29
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25047..25862)
DNA (816bp) protein (272aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
UPI0003CFDC17 related cluster n=1 Tax=unknown RepID=UPI0003CFDC17
Citrate synthase {ECO:0000313|EMBL:ESZ88422.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
SCNpilot_expt_1000_bf_scaffold_5825_curated_30
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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25940..26206
DNA (267bp) protein (89aa)
Acyl-CoA transferase/carnitine dehydrastase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRP7_PUSST
acyl-CoA transferase
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
Displaying 30 items

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