ggKbase home page

SCNpilot_expt_1000_bf_scaffold_32610_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_32610_curated_1
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..309
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GA26_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96852.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_32610_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(357..1328)
DNA (972bp) protein (324aa)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSD4_9SPHN
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000313|EMBL:GAD48274.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_32610_curated_3
unknown

Not on your lists

1613..2245
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_32610_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2242..2571
DNA (330bp) protein (110aa)
Putative murein peptide carboxypeptidase {ECO:0000313|EMBL:AKH41301.1}; EC=3.4.16.- {ECO:0000313|EMBL:AKH41301.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase U61, LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
Peptidase U61, LD-carboxypeptidase A n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z882_9SPHN
SCNpilot_expt_1000_bf_scaffold_32610_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2597..3532
DNA (936bp) protein (312aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
malonyl CoA-ACP transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJB7_9SPHN
SCNpilot_expt_1000_bf_scaffold_32610_curated_6
unknown

Not on your lists

comp(3980..4174)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_32610_curated_7
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4432..4896
DNA (465bp) protein (155aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8F0_NOVAD
SCNpilot_expt_1000_bf_scaffold_32610_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4886..5527
DNA (642bp) protein (214aa)
DNA polymerase III subunit beta {ECO:0000313|EMBL:AKH41304.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AKH41304.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9T3_ERYLH
SCNpilot_expt_1000_bf_scaffold_32610_curated_9
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6162..7115)
DNA (954bp) protein (318aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8E6_NOVAD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Displaying 9 items

View Taxonomy