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SCNpilot_expt_1000_bf_scaffold_7052_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7052_curated_1
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..188)
DNA (186bp) protein (62aa)
Tyrosine recombinase XerC n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WCZ7_9SPHN
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
integrase; K04763 integrase/recombinase XerD
SCNpilot_expt_1000_bf_scaffold_7052_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(238..1878)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5K3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48401.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7052_curated_3
unknown

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comp(2056..2190)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7052_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2289..2858
DNA (570bp) protein (190aa)
Shikimate kinase 1 {ECO:0000313|EMBL:AKH41779.1}; EC=2.7.1.71 {ECO:0000313|EMBL:AKH41779.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJN3_9SPHN
SCNpilot_expt_1000_bf_scaffold_7052_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2855..3958
DNA (1104bp) protein (368aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:AKH41780.1}; EC=4.2.3.4 {ECO:0000313|EMBL:AKH41780.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6S0_9SPHN
SCNpilot_expt_1000_bf_scaffold_7052_curated_6
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4027..4326
DNA (300bp) protein (100aa)
Excinuclease ABC subunit C n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVY6_9SPHN
Excinuclease ABC subunit C {ECO:0000313|EMBL:EJU11601.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
excinuclease ABC subunit C
SCNpilot_expt_1000_bf_scaffold_7052_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4518..5897
DNA (1380bp) protein (460aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQZ3_9SPHN
major facilitator superfamily protein; K03305 proton-dependent oligopeptide transporter, POT family
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK66015.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7052_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5888..6718)
DNA (831bp) protein (277aa)
Methionine gamma-lyase {ECO:0000313|EMBL:AKH44214.1}; EC=4.4.1.11 {ECO:0000313|EMBL:AKH44214.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine sulfhydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA65_NOVAD
SCNpilot_expt_1000_bf_scaffold_7052_curated_9
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7151..7540)
DNA (390bp) protein (130aa)
urease n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225ED72
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_7052_curated_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7594..8370)
DNA (777bp) protein (259aa)
enoyl-CoA hydratase/isomeras; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
enoyl-CoA hydratase n=1 Tax=Sphingomonas melonis RepID=UPI000381EEAE
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:GAO38815.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_7052_curated_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8422..8877)
DNA (456bp) protein (152aa)
glutathione-disulfide reductase (EC:1.8.1.7); K00383 glutathione reductase (NADPH) [EC:1.8.1.7]
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component n=1 Tax=Novosphingobium sp. AP12 RepID=J2GL32_9SPHN
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component {ECO:0000313|EMBL:EJL30875.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Displaying 11 items

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