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SCNpilot_expt_1000_bf_scaffold_3782_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3782_curated_1
unknown

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comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3782_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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531..770
DNA (240bp) protein (80aa)
TonB-dependent receptor, plug n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EGW3_9SPHN
Pesticin receptor {ECO:0000313|EMBL:AKH44132.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor, plug
SCNpilot_expt_1000_bf_scaffold_3782_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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947..4150
DNA (3204bp) protein (1068aa)
Autotransporter beta-domain-containing protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IF33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44133.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
autotransporter beta-domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3782_curated_4
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4415..4945)
DNA (531bp) protein (177aa)
PilZ domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GPB9_9SPHN
PilZ domain-containing protein {ECO:0000313|EMBL:EJL24618.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3782_curated_5
unknown

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5574..5822
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3782_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6113..6976)
DNA (864bp) protein (288aa)
Chemotaxis protein MotA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAJ6_9SPHN
Motility protein A {ECO:0000313|EMBL:AKH44173.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
chemotaxis protein MotA; K02556 chemotaxis protein MotA
SCNpilot_expt_1000_bf_scaffold_3782_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7010..7918)
DNA (909bp) protein (303aa)
Flagellar hook-associated protein FlgL n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAJ5_9SPHN
Flagellar hook-associated protein flgL {ECO:0000313|EMBL:GAO55269.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL
SCNpilot_expt_1000_bf_scaffold_3782_curated_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7926..9263)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J169_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB17845.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
flagellar hook-associated protein 1 FlgK; K02396 flagellar hook-associated protein 1 FlgK
SCNpilot_expt_1000_bf_scaffold_3782_curated_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9266..9553)
DNA (288bp) protein (96aa)
Flagellar protein FlgJ n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAJ3_9SPHN
flagellar protein FlgJ; K02395 flagellar protein FlgJ
Flagellar protein FlgJ {ECO:0000313|EMBL:EHJ61630.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_3782_curated_10
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9550..9693)
DNA (144bp) protein (48aa)
Flagellar P-ring protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAJ2_9SPHN
flagellar P-ring protein FlgI; K02394 flagellar P-ring protein precursor FlgI
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_3782_curated_11
unknown

Not on your lists

9863..10246
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3782_curated_12
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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comp(10664..11326)
DNA (663bp) protein (221aa)
Flagellar L-ring protein, putative n=1 Tax=Ricinus communis RepID=B9TJF8_RICCO
Flagellar L-ring protein precursor, putative
Flagellar L-ring protein, putative {ECO:0000313|EMBL:EEF24006.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_1000_bf_scaffold_3782_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11331..12119)
DNA (789bp) protein (263aa)
flagellar basal body rod protein FlgG n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E49F
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:AKH44179.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
flagellar basal-body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
SCNpilot_expt_1000_bf_scaffold_3782_curated_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12143..12883)
DNA (741bp) protein (247aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIT7_9SPHN
Flagellar basal-body rod protein flgF {ECO:0000313|EMBL:GAO55275.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar basal-body rod protein FlgF; K02391 flagellar basal-body rod protein FlgF
Displaying 14 items

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