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SCNpilot_expt_1000_bf_scaffold_4256_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4256_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..277)
DNA (276bp) protein (92aa)
Acetyl-CoA C-acetyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ7_9SPHN
acetyl-CoA C-acetyltransferase
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:BAK68178.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(843..1631)
DNA (789bp) protein (263aa)
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:BAK68177.1}; EC=4.2.1.17 {ECO:0000313|EMBL:BAK68177.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative enoyl-CoA hydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ6_9SPHN
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_4256_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1651..3483)
DNA (1833bp) protein (611aa)
Acyl-CoA synthetase (NDP forming) n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ5_9SPHN
Acyl-CoA synthetase (NDP forming) {ECO:0000313|EMBL:BAK68176.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
acyl-CoA synthetase
SCNpilot_expt_1000_bf_scaffold_4256_curated_4
unknown

Not on your lists

3555..3935
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4256_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3815..4798)
DNA (984bp) protein (328aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ4_9SPHN
putative hydrolase; K07046
Putative hydrolase {ECO:0000313|EMBL:BAK68175.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4993..6384)
DNA (1392bp) protein (464aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ3_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68174.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6703..7704)
DNA (1002bp) protein (334aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ3_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68174.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_8
unknown

Not on your lists

comp(8320..8583)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4256_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8733..9836
DNA (1104bp) protein (368aa)
putative transferase; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Putative transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ2_9SPHN
Putative transferase {ECO:0000313|EMBL:BAK68173.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9893..11215
DNA (1323bp) protein (441aa)
Phthalate 4,5-dioxygenase {ECO:0000313|EMBL:BAK68172.1}; EC=1.14.12.7 {ECO:0000313|EMBL:BAK68172.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phthalate 4,5-dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ1_9SPHN
phthalate 4,5-dioxygenase
SCNpilot_expt_1000_bf_scaffold_4256_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11245..11715
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPJ0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68171.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11761..13101
DNA (1341bp) protein (447aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI9_9SPHN
putative aromatic acid transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK68170.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13135..14574
DNA (1440bp) protein (480aa)
putative succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Putative succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAK68169.1}; EC=1.2.1.- {ECO:0000313|EMBL:BAK68169.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative succinate-semialdehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI8_9SPHN
SCNpilot_expt_1000_bf_scaffold_4256_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14591..14989
DNA (399bp) protein (133aa)
Acyl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMZ1_9SPHN
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65439.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15040..15741
DNA (702bp) protein (234aa)
Acyl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMZ1_9SPHN
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65439.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15738..16853
DNA (1116bp) protein (372aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMZ0_9SPHN
putative acyl-CoA dehydrogenase
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAK65438.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16930..17952)
DNA (1023bp) protein (341aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68151.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17975..18358)
DNA (384bp) protein (128aa)
Twin-arginine translocation pathway signal protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QTQ6_9BURK
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:ETR77125.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_4256_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18997..22005)
DNA (3009bp) protein (1003aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI6_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK68167.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22723..24060)
DNA (1338bp) protein (446aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI4_9SPHN
4-hydroxybenzoate transporter {ECO:0000313|EMBL:GAO53314.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter
SCNpilot_expt_1000_bf_scaffold_4256_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24172..24417)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B30533
Uncharacterized protein {ECO:0000313|EMBL:KHS45605.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4256_curated_22
unknown

Not on your lists

24644..24787
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4256_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25794..26852
DNA (1059bp) protein (353aa)
monooxygenase; K14733 limonene 1,2-monooxygenase [EC:1.14.13.107]
Monooxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH2_9SPHN
Monooxygenase {ECO:0000313|EMBL:BAK68153.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26849..27355)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KAE8_9SPHN
4-hydroxyphenylacetate 3-monooxygenase, reductase component {ECO:0000313|EMBL:GAO53321.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4256_curated_25
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27352..28122)
DNA (771bp) protein (257aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCV0_SPHWW
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_expt_1000_bf_scaffold_4256_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28115..28531)
DNA (417bp) protein (139aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPH8_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK68159.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_27
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28609..29871
DNA (1263bp) protein (421aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
SCNpilot_expt_1000_bf_scaffold_4256_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30026..30736
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68161.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4256_curated_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30973..31980
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53317.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4256_curated_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31977..32741
DNA (765bp) protein (255aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO53316.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO53316.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI2_9SPHN
putative oxidoreductase
Displaying items 1-30 of 38 in total

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