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SCNpilot_expt_1000_bf_scaffold_4654_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4654_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1102)
DNA (1101bp) protein (367aa)
Anthranilate synthase component 1 {ECO:0000313|EMBL:AKH41655.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AKH41655.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase component I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRE1_9SPHN
SCNpilot_expt_1000_bf_scaffold_4654_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1199..1672)
DNA (474bp) protein (158aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZI2_9SPHN
peptidyl-prolyl isomerase
SCNpilot_expt_1000_bf_scaffold_4654_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1672..3129)
DNA (1458bp) protein (486aa)
Peptidyl-prolyl cis-trans isomerase D {ECO:0000313|EMBL:AKH41654.1}; EC=5.2.1.8 {ECO:0000313|EMBL:AKH41654.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZI2_9SPHN
peptidyl-prolyl isomerase
SCNpilot_expt_1000_bf_scaffold_4654_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3342..4100
DNA (759bp) protein (253aa)
Triosephosphate isomerase {ECO:0000313|EMBL:AKH41653.1}; EC=5.3.1.1 {ECO:0000313|EMBL:AKH41653.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=2 Tax=Novosphingobium RepID=F6IPY0_9SPHN
SCNpilot_expt_1000_bf_scaffold_4654_curated_5
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4201..4599
DNA (399bp) protein (133aa)
Protein translocase subunit secG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6R6_NOVAD
Scaffold17, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30770.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
protein translocase subunit secG; K03075 preprotein translocase subunit SecG
SCNpilot_expt_1000_bf_scaffold_4654_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4733..6367
DNA (1635bp) protein (545aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI37_9SPHN
SCNpilot_expt_1000_bf_scaffold_4654_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6434..6904)
DNA (471bp) protein (157aa)
Putative small heat shock protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRD7_9SPHN
Putative small heat shock protein {ECO:0000313|EMBL:GAD47924.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
heat shock protein Hsp20; K04080 molecular chaperone IbpA
SCNpilot_expt_1000_bf_scaffold_4654_curated_8
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7062..7328
DNA (267bp) protein (89aa)
Glutaredoxin 3 n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC26_9SPHN
Glutaredoxin {ECO:0000313|EMBL:KEO87242.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
glutaredoxin; K03676 glutaredoxin 3
SCNpilot_expt_1000_bf_scaffold_4654_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7325..8167
DNA (843bp) protein (281aa)
2-oxoglutaramate amidase {ECO:0000313|EMBL:AKH41648.1}; EC=3.5.1.111 {ECO:0000313|EMBL:AKH41648.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WJ72_9SPHN
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
SCNpilot_expt_1000_bf_scaffold_4654_curated_10
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8353..8643
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SHR5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12334.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4654_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8889..9707)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003784E4F
Alcohol dehydrogenase {ECO:0000313|EMBL:KDP75135.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4654_curated_12
Bdellovibrio bacteriovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9995..10720)
DNA (726bp) protein (242aa)
PREDICTED: proline synthase co-transcribed bacterial homolog protein-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15474
Alanine racemase domain protein {ECO:0000313|EMBL:AHI05130.1}; TaxID=765869 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio bacteriovorus W.;"
alanine racemase domain-containing protein; K06997
SCNpilot_expt_1000_bf_scaffold_4654_curated_13
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10717..11421)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HGT7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96748.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
glutamine amidotransferase class-I
SCNpilot_expt_1000_bf_scaffold_4654_curated_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11418..11987)
DNA (570bp) protein (190aa)
MarR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LN27_9RHIZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EKF19139.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
trancriptional regulatory protein, MarR family
SCNpilot_expt_1000_bf_scaffold_4654_curated_15
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12093..12332
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SNC6_9SPHN
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_4654_curated_16
unknown

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12395..12493
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 16 items

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