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SCNpilot_expt_1000_bf_scaffold_1213_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1213_curated_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..375
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEW4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS48033.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

419..1129
DNA (711bp) protein (237aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
7-cyano-7-deazaguanine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2U7_9SPHN
ExsB protein; K06920 queuosine biosynthesis protein QueC
SCNpilot_expt_1000_bf_scaffold_1213_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1132..2682
DNA (1551bp) protein (517aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3K2_NOVAD
L-galactonate transporter {ECO:0000313|EMBL:AKH43473.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_1213_curated_4
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2686..3213)
DNA (528bp) protein (176aa)
superoxide dismutase (Cu/Zn); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N610_ERYLH
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_1213_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3288..3746)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7B2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43475.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3765..5936)
DNA (2172bp) protein (724aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL48_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49092.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5942..6358)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2V3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49093.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6355..7179)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUN7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43479.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7176..9512)
DNA (2337bp) protein (779aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N604_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:ABC64887.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9582..10148)
DNA (567bp) protein (189aa)
Tail tape meausure protein, putative n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N603_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH43481.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tail tape meausure protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10141..10338)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL52_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49097.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_12
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10335..10649)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C15
Uncharacterized protein {ECO:0000313|EMBL:EJL27563.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_13
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10646..11053)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N600_ERYLH
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_1213_curated_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11070..11456)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJM2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92378.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_15
unknown

Not on your lists

comp(11460..11627)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1213_curated_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11624..12082)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PJQ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92706.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12113..13246)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PA03_9SPHN
Phage capsid protein {ECO:0000313|EMBL:KHK92379.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_18
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13352..13765)
DNA (414bp) protein (138aa)
Phage prohead protease, HK97 family n=1 Tax=Novosphingobium sp. AP12 RepID=J3A8Q2_9SPHN
Peptidase U35 {ECO:0000313|EMBL:KHL24546.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
phage protease; K06904
SCNpilot_expt_1000_bf_scaffold_1213_curated_19
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13762..14070)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E6FA
Uncharacterized protein {ECO:0000313|EMBL:EDL49060.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_20
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14067..15227)
DNA (1161bp) protein (387aa)
Genetic exchange protein, putative n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5Z3_ERYLH
genetic exchange protein
Genetic exchange protein, putative {ECO:0000313|EMBL:ABC64898.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_1213_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15490..16143
DNA (654bp) protein (218aa)
DedA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3M2_NOVAD
hypothetical protein
DedA {ECO:0000313|EMBL:ABD27551.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_1213_curated_22
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16199..16759
DNA (561bp) protein (187aa)
NADPH-dependent FMN reductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JBW3_9SPHN
Scaffold14, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31086.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_1213_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16766..18115)
DNA (1350bp) protein (450aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKM3_9SPHN
Inner membrane metabolite transport protein YdjE {ECO:0000313|EMBL:AKH41752.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18337..18765)
DNA (429bp) protein (143aa)
peroxiredoxin n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003686019
Sphingomonas taxi strain 30a NODE_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28441.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
OsmC-like protein; K04063 osmotically inducible protein OsmC
SCNpilot_expt_1000_bf_scaffold_1213_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18944..19996)
DNA (1053bp) protein (351aa)
serine palmitoyltransferase (EC:2.3.1.50); K00639 glycine C-acetyltransferase [EC:2.3.1.29]
Putative serine palmitoyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2W9_9SPHN
Putative serine palmitoyltransferase {ECO:0000313|EMBL:GAD49108.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_1213_curated_26
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20019..20258)
DNA (240bp) protein (80aa)
Putative acyl carrier protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUQ2_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_1213_curated_27
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20328..20690)
DNA (363bp) protein (121aa)
Chemotaxis protein CheY n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSP1_9SPHN
Chemotaxis protein CheY {ECO:0000313|EMBL:EQB19341.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
two-component system PleD family response regulator DivK; K11443 two-component system, cell cycle response regulator DivK
SCNpilot_expt_1000_bf_scaffold_1213_curated_28
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20710..21018
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5Y1_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC64910.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_1213_curated_29
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21015..21644
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C2E
Uncharacterized protein {ECO:0000313|EMBL:KEO91025.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1213_curated_30
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21641..22102
DNA (462bp) protein (154aa)
Endoribonuclease L-PSP n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N3_NOVAD
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABD27540.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Displaying items 1-30 of 45 in total

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