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SCNpilot_expt_300_bf_scaffold_3302

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_3302_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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249..614
DNA (366bp) protein (122aa)
UPI0003D064EB related cluster n=1 Tax=unknown RepID=UPI0003D064EB
Glyoxalase {ECO:0000313|EMBL:ESZ18852.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_300_bf_scaffold_3302_2
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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710..955
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium tuberculosis GM 1503 RepID=D5Z454_MYCTU
Antitoxin VapB11 {ECO:0000313|EMBL:KJE76518.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphil
hypothetical protein
SCNpilot_expt_300_bf_scaffold_3302_3
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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949..1347
DNA (399bp) protein (133aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; T
Ribonuclease VapC n=1 Tax=Gordonia araii NBRC 100433 RepID=G7GYD2_9ACTO
PilT protein domain-containing protein
SCNpilot_expt_300_bf_scaffold_3302_4
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1447..4857)
DNA (3411bp) protein (1137aa)
ABC transporter n=1 Tax=Streptomyces viridosporus RepID=UPI000375CC50 rbh
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EFF91148.2}; TaxID=645465 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces s
ABC transporter ATP-binding protein
SCNpilot_expt_300_bf_scaffold_3302_5
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(5122..5754)
DNA (633bp) protein (211aa)
thrH; phosphoserine:homoserine phosphotransferase (EC:2.7.1.- 2.7.1.39 3.1.3.3)
Phosphoserine:homoserine phosphotransferase {ECO:0000313|EMBL:BAN03209.1}; EC=2.7.1.- {ECO:0000313|EMBL:BAN03209.1};; EC=2.7.1.39 {ECO:0000313|EMBL:BAN03209.1};; EC=3.1.3.3 {ECO:0000313|EMBL:BAN03209.
Phosphoserine:homoserine phosphotransferase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A427_9ACTN rbh
SCNpilot_expt_300_bf_scaffold_3302_6
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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6017..7711
DNA (1695bp) protein (565aa)
rho; transcription termination factor Rho (EC:3.6.1.-)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1313172 speci
Transcription termination factor Rho n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5AIX1_9ACTN rbh
SCNpilot_expt_300_bf_scaffold_3302_7
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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7807..8055
DNA (249bp) protein (83aa)
50S ribosomal protein L31 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M176_ACIFD
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrim
50S ribosomal protein L31
SCNpilot_expt_300_bf_scaffold_3302_8
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

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8757..9056
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE53320.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
SCNpilot_expt_300_bf_scaffold_3302_9
marine actinobacterium MedAcidi-G2A, Actinobacteria, Actinobacteria, Bacteria

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9056..10120
DNA (1065bp) protein (355aa)
Peptide chain release factor 1 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M174_ACIFD rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1550400 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAc
peptide chain release factor 1
SCNpilot_expt_300_bf_scaffold_3302_10
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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10123..11022
DNA (900bp) protein (300aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
hemK; protein methyltransferase HemK (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YVM8_9ACTN
SCNpilot_expt_300_bf_scaffold_3302_11
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11164..11757)
DNA (594bp) protein (198aa)
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
SCNpilot_expt_300_bf_scaffold_3302_12
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11815..12432
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE49228.1}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
translation factor
Sua5/YciO/YrdC/YwlC family protein id=2054808 bin=GWD2_Chloroflexi_49_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Displaying 12 items

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