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SCNpilot_expt_300_bf_scaffold_8137

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_8137_1
unknown

Not on your lists

comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_8137_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(70..753)
DNA (684bp) protein (228aa)
Conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV9_SPHAL rbh
conjugal transfer protein TrbF
Conjugal transfer protein {ECO:0000313|EMBL:ABF54313.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" so
SCNpilot_expt_300_bf_scaffold_8137_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(774..1097)
DNA (324bp) protein (108aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV8_SPHAL
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:EZP68907.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sou
conjugal transfer protein TrbL
SCNpilot_expt_300_bf_scaffold_8137_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1493..2467
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MW78_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19553.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
SCNpilot_expt_300_bf_scaffold_8137_5
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2279..2998)
DNA (720bp) protein (240aa)
Conjugative transfer protein TrbJ n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRA2_9SPHN rbh
Conjugative transfer protein TrbJ {ECO:0000313|EMBL:CCW17978.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphin
conjugal transfer protein TrbJ
SCNpilot_expt_300_bf_scaffold_8137_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3000..4763
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXD1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94497.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas di
SCNpilot_expt_300_bf_scaffold_8137_7
unknown

Not on your lists

4857..5225
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_8137_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5654..5989)
DNA (336bp) protein (112aa)
Conjugative transfer protein TrbC n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML59_9SPHN
Conjugative transfer protein TrbC {ECO:0000313|EMBL:KEZ19459.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
type IV secretion system protein VirB2
SCNpilot_expt_300_bf_scaffold_8137_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5986..6786)
DNA (801bp) protein (267aa)
conjugal transfer protein TrbB n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035F80BD
Type II secretion system protein E {ECO:0000313|EMBL:EZP68902.1}; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomon
type II secretion system protein E
SCNpilot_expt_300_bf_scaffold_8137_10
unknown

Not on your lists

comp(6980..7096)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_8137_11
unknown

Not on your lists

comp(7153..7614)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_8137_12
unknown

Not on your lists

comp(7584..7907)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_8137_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7959..8471)
DNA (513bp) protein (171aa)
Regulatory protein, LysR:LysR, substrate-binding n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML54_9SPHN
LysR:LysR substrate-binding regulatory protein {ECO:0000313|EMBL:KEZ19457.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" so
LysR family transcriptional regulator
Displaying 13 items

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