ggKbase home page

SCNpilot_expt_300_bf_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 173 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_87_1
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..951)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B681C3
hypothetical protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1262..2446
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8E6_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO48155.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2823..3863
DNA (1041bp) protein (347aa)
Integral membrane proteins containing uncharacterized repeats-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAD1_NITMU
Integral membrane proteins containing uncharacterized repeats-like protein {ECO:0000313|EMBL:ABB75938.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitroso
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3942..5069
DNA (1128bp) protein (376aa)
Integral membrane proteins containing uncharacterized repeats-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB21_NITMU
hypothetical protein
Integral membrane proteins containing uncharacterized repeats-like protein {ECO:0000313|EMBL:ABB74050.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitroso
SCNpilot_expt_300_bf_scaffold_87_5
unknown

Not on your lists

5162..5881
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_87_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5871..6908)
DNA (1038bp) protein (346aa)
O-methyltransferase, family 2 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9U0_NITMU rbh
O-methyltransferase family protein
O-methyltransferase, family 2 {ECO:0000313|EMBL:ABB74481.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
SCNpilot_expt_300_bf_scaffold_87_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7028..7537)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9T9_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74482.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
SCNpilot_expt_300_bf_scaffold_87_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7890..9032)
DNA (1143bp) protein (381aa)
Integral membrane proteins containing uncharacterized repeats-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAD1_NITMU rbh
Integral membrane proteins containing uncharacterized repeats-like protein {ECO:0000313|EMBL:ABB74290.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitroso
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..10454)
DNA (1191bp) protein (397aa)
Integral membrane proteins containing uncharacterized repeats-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAD1_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO48155.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_10
Erwinia mallotivora, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10711..11673)
DNA (963bp) protein (321aa)
putative DNA-3-methyladenine glycosidase II n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B06
Ada {ECO:0000313|EMBL:EXU73518.1}; TaxID=69222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia mallotivora.;"
alkA; DNA-3-methyladenine glycosidase II
SCNpilot_expt_300_bf_scaffold_87_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11696..12196)
DNA (501bp) protein (167aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
methylated-DNA-(protein)-cysteine S-methyltransferase (EC:2.1.1.63)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Pseudomonas fluorescens RepID=UPI00038254CF
SCNpilot_expt_300_bf_scaffold_87_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12454..13437
DNA (984bp) protein (328aa)
DnaJ-class molecular chaperone CbpA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI61_9PROT rbh
DnaJ-class molecular chaperone CbpA {ECO:0000313|EMBL:CCU62113.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
heat shock protein DnaJ-like protein
SCNpilot_expt_300_bf_scaffold_87_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13434..13838
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHT1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62114.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14332..17268
DNA (2937bp) protein (979aa)
Ca ion P-type ATPase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFQ7_9PROT rbh
Ca ion P-type ATPase {ECO:0000313|EMBL:CCU61122.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus
E1-E2 type ATPase
SCNpilot_expt_300_bf_scaffold_87_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17743..18222
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5T4_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO48515.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19110..20369
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6X4_NITMU rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75497.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
SCNpilot_expt_300_bf_scaffold_87_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20426..20911)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFY8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61098.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
antibiotic biosynthesis monooxygenase
SCNpilot_expt_300_bf_scaffold_87_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(20915..21337)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B5C8F
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABJ87574.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soliba
SCNpilot_expt_300_bf_scaffold_87_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(21276..23180)
DNA (1905bp) protein (635aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C6A19 rbh
multi-sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_87_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23775..24065)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8T9_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74832.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
SCNpilot_expt_300_bf_scaffold_87_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24313..26508)
DNA (2196bp) protein (732aa)
transketolase (EC:2.2.1.1)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003785B2B rbh
Transketolase {ECO:0000313|EMBL:KIO48534.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_87_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26634..29180)
DNA (2547bp) protein (849aa)
Glycogen phosphorylase {ECO:0000313|EMBL:CCU61094.1}; EC=2.4.1.1 {ECO:0000313|EMBL:CCU61094.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadacea
Glycogen phosphorylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFH6_9PROT rbh
alpha-glucan phosphorylase
SCNpilot_expt_300_bf_scaffold_87_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29633..30010
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8U6_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO48348.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30059..30550
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DNQ2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61090.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
adenylate cyclase
SCNpilot_expt_300_bf_scaffold_87_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30689..31375
DNA (687bp) protein (229aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFH4_9PROT rbh
Endonuclease {ECO:0000313|EMBL:KIO48351.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
endonuclease/exonuclease/phosphatase
SCNpilot_expt_300_bf_scaffold_87_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32026..32568
DNA (543bp) protein (181aa)
Cyclase/dehydrase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSC0_9PROT
Cyclase/dehydrase {ECO:0000313|EMBL:CCU62275.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cyclase/dehydrase
SCNpilot_expt_300_bf_scaffold_87_27
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32899..33405
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UAJ8_RHIRD
Membrane protein {ECO:0000313|EMBL:KJF68724.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhi
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_28
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33665..34258
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8Y8_NITMU
Membrane protein {ECO:0000313|EMBL:AKH39627.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34326..34847)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIL3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48354.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_87_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34844..35152)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIA0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62272.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
Displaying items 1-30 of 173 in total

View Taxonomy