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SCNpilot_expt_300_bf_scaffold_111

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_111_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..337
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61072.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
SCNpilot_expt_300_bf_scaffold_111_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

387..713
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO50241.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
SCNpilot_expt_300_bf_scaffold_111_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1079..1612
DNA (534bp) protein (178aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:KIO50505.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=58133 species="Bacte
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG6_9PROT
SCNpilot_expt_300_bf_scaffold_111_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1641..2174)
DNA (534bp) protein (178aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DNN3_9PROT
SCNpilot_expt_300_bf_scaffold_111_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2164..2910)
DNA (747bp) protein (249aa)
Probable 6-oxopurine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01963};; Purine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID
5'-methylthioadenosine phosphorylase (EC:2.4.2.1)
Probable 6-oxopurine nucleoside phosphorylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEY1_9PROT rbh
SCNpilot_expt_300_bf_scaffold_111_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2986..3681)
DNA (696bp) protein (232aa)
hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM8_9PROT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KIO50244.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Ni
SCNpilot_expt_300_bf_scaffold_111_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3843..4727)
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1288494
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFW9_9PROT rbh
UTP-glucose-1-phosphate uridylyltransferase
SCNpilot_expt_300_bf_scaffold_111_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4910..6982)
DNA (2073bp) protein (691aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG8_9PROT rbh
SCNpilot_expt_300_bf_scaffold_111_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6983..8341)
DNA (1359bp) protein (453aa)
Cell division protein ZipA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBB8_NITMU rbh
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
ZipA, C-terminal FtsZ-binding region
SCNpilot_expt_300_bf_scaffold_111_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8322..11951)
DNA (3630bp) protein (1210aa)
Chromosome partition protein Smc n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEY2_9PROT rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
chromosome segregation protein SMC
SCNpilot_expt_300_bf_scaffold_111_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11984..12400
DNA (417bp) protein (139aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; EC=1.7.1.13 {ECO:0000255|HAMAP-Rule:MF_00818};; 7-cyano-7-carbaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818};
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=QUEF_NITMU
GTP cyclohydrolase I
SCNpilot_expt_300_bf_scaffold_111_12
Mycobacterium canettii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12638..13789)
DNA (1152bp) protein (384aa)
PE-PGRS family protein {ECO:0000313|EMBL:CCC43798.1}; TaxID=1048245 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source=
SCNpilot_expt_300_bf_scaffold_111_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14074..14451)
DNA (378bp) protein (126aa)
Ethidium bromide-methyl viologen resistance protein EmrE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIA1_9PROT
Ethidium bromide-methyl viologen resistance protein EmrE {ECO:0000313|EMBL:CCU62349.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitros
small multidrug resistance protein
SCNpilot_expt_300_bf_scaffold_111_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14758..16539
DNA (1782bp) protein (594aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGH7_9PROT rbh
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KIO50252.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
single-stranded-DNA-specific exonuclease RecJ
SCNpilot_expt_300_bf_scaffold_111_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16700..20170
DNA (3471bp) protein (1157aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=58133 species="Bacteria; Pro
Transcription-repair-coupling factor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR1_9PROT rbh
transcription-repair coupling factor
SCNpilot_expt_300_bf_scaffold_111_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20317..21966
DNA (1650bp) protein (550aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSI9_9PROT rbh
Diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:CCU62355.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
diguanylate cyclase
SCNpilot_expt_300_bf_scaffold_111_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21977..22870)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62356.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
SCNpilot_expt_300_bf_scaffold_111_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22948..24216)
DNA (1269bp) protein (423aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_0
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIE8_9PROT rbh
Phosphoribosylglycinamide formyltransferase 2
SCNpilot_expt_300_bf_scaffold_111_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24587..25417
DNA (831bp) protein (277aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:CCU62358.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCU62358.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonada
phosphoserine phosphatase SerB (EC:3.1.3.3)
Phosphoserine phosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR4_9PROT rbh
SCNpilot_expt_300_bf_scaffold_111_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25533..28253)
DNA (2721bp) protein (907aa)
TonB-dependent receptor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIA7_9PROT rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCU62359.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_111_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29048..30235)
DNA (1188bp) protein (396aa)
Putative signal peptide protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSJ5_9PROT rbh
Putative signal peptide protein {ECO:0000313|EMBL:CCU62360.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
BNR repeat-containing glycosyl hydrolase
SCNpilot_expt_300_bf_scaffold_111_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30333..31178)
DNA (846bp) protein (282aa)
RIO-like kinase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKU7_NITSI
Kinase {ECO:0000313|EMBL:KIO50257.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RIO-like kinase
SCNpilot_expt_300_bf_scaffold_111_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31564..32814)
DNA (1251bp) protein (417aa)
Proton/glutamate symport protein @ Sodium/glutamate symport protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFR0_9PROT rbh
Proton/glutamate symport protein @ Sodium/glutamate symport protein {ECO:0000313|EMBL:CCU62066.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
Sodium:dicarboxylate symporter
SCNpilot_expt_300_bf_scaffold_111_24
unknown

Not on your lists

32829..33149
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_111_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33165..34163
DNA (999bp) protein (333aa)
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM8_9PROT rbh
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:CCU62064.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
glycosyl transferase family protein
SCNpilot_expt_300_bf_scaffold_111_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34165..34749
DNA (585bp) protein (195aa)
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI20_9PROT
UDP-N-acetylglucosamine 4,6-dehydratase {ECO:0000313|EMBL:CCU62063.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
polysaccharide biosynthesis protein CapD
SCNpilot_expt_300_bf_scaffold_111_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34767..36101
DNA (1335bp) protein (445aa)
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI20_9PROT
UDP-N-acetylglucosamine 4,6-dehydratase {ECO:0000313|EMBL:CCU62063.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
polysaccharide biosynthesis protein CapD
SCNpilot_expt_300_bf_scaffold_111_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36154..37959)
DNA (1806bp) protein (602aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Ni
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHT3_9PROT rbh
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
SCNpilot_expt_300_bf_scaffold_111_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38067..40031)
DNA (1965bp) protein (655aa)
TonB-dependent receptor n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBD6_NITMU rbh
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABB73935.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
SCNpilot_expt_300_bf_scaffold_111_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40694..40903
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62059.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
Displaying items 1-30 of 125 in total

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