ggKbase home page

SCNpilot_expt_300_bf_scaffold_1087

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1087_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(60..932)
DNA (873bp) protein (291aa)
Ribokinase n=8 Tax=Bacteroidales RepID=D0TJC8_9BACE id=719826 bin=RAAC39 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RAAC39 organism_group=Ignavibacteria
ribokinase
Ribokinase {ECO:0000313|EMBL:AIE87745.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil
SCNpilot_expt_300_bf_scaffold_1087_2
unknown

Not on your lists

1050..1448
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1087_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

1459..2319
DNA (861bp) protein (287aa)
ABC-type polysaccharide/polyol phosphate export systems, permease component n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX69_9BACT
Polysaccharide ABC transporter, permease component
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_1087_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

2316..3068
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6LNX1_9CLOT
Teichoic acid export ATP-binding protein TagH
Teichoic acid export ATP-binding protein TagH {ECO:0000313|EMBL:AIE87742.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" sourc
SCNpilot_expt_300_bf_scaffold_1087_5
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(3019..3960)
DNA (942bp) protein (314aa)
putative glycosyltransferase Tax=RBG_13_Aminicenantes_62_12_curated
Glycosyltransferase, group 2 family protein id=4091111 bin=GWF2_Syntrophobacterales_56_9 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
family 2 glycosyl transferase
SCNpilot_expt_300_bf_scaffold_1087_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3991..4455
DNA (465bp) protein (155aa)
Transcription elongation factor GreA n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L0C1_9BACT
Transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=661478 species="Bacteria
SCNpilot_expt_300_bf_scaffold_1087_7
unknown

Not on your lists

4460..5131
DNA (672bp) protein (224aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1087_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

5453..6100
DNA (648bp) protein (216aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-k
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Halomonas sp. HAL1 RepID=G4FCL2_9GAMM
cytidylyltransferase
SCNpilot_expt_300_bf_scaffold_1087_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

6171..8183
DNA (2013bp) protein (671aa)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWT0_9BACT rbh
(p)ppgpp synthetase i, spot/rela
(P)ppgpp synthetase i, spot/rela {ECO:0000313|EMBL:AIE86859.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimon
SCNpilot_expt_300_bf_scaffold_1087_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

8140..8364
DNA (225bp) protein (75aa)
(p)ppgpp synthetase i, spot/rela
(P)ppgpp synthetase i, spot/rela {ECO:0000313|EMBL:AIE86859.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimon
SCNpilot_expt_300_bf_scaffold_1087_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8380..8808
DNA (429bp) protein (143aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=411475 species="Bacter
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridiales RepID=G9YXA9_9FIRM
D-tyrosyl-tRNA(Tyr) deacylase
SCNpilot_expt_300_bf_scaffold_1087_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(8745..9818)
DNA (1074bp) protein (358aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_012
Cyclic pyranopterin monophosphate synthase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7T6_SPHTD rbh
Molybdenum cofactor biosynthesis protein MoaA
SCNpilot_expt_300_bf_scaffold_1087_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9881..10555
DNA (675bp) protein (225aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVP0_9BACT
RNA polymerase subunit sigma-24
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_1087_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

10555..11400
DNA (846bp) protein (282aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE87737.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
SCNpilot_expt_300_bf_scaffold_1087_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

11381..12376
DNA (996bp) protein (332aa)
PepD-like putative serine protease n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WD21_9ACTO
serine protease
Serine protease {ECO:0000313|EMBL:AIE87736.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli G
SCNpilot_expt_300_bf_scaffold_1087_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(12379..13980)
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B405BF rbh
Single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:AIE83427.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" sourc
SCNpilot_expt_300_bf_scaffold_1087_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14134..14661)
DNA (528bp) protein (176aa)
transcription antitermination protein NusG n=1 Tax=Alicyclobacillus pohliae RepID=UPI000362077C
Transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadal
SCNpilot_expt_300_bf_scaffold_1087_18
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14665..14919)
DNA (255bp) protein (85aa)
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbri
SCNpilot_expt_300_bf_scaffold_1087_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

15149..15742
DNA (594bp) protein (198aa)
Transcriptional regulator PadR-like family protein n=1 Tax=uncultured microorganism RepID=F8U8X0_9ZZZZ
regulator of phenolic acid metabolism PadR
Regulator of phenolic acid metabolism PadR {ECO:0000313|EMBL:AIE83424.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="
SCNpilot_expt_300_bf_scaffold_1087_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(15735..16280)
DNA (546bp) protein (182aa)
Transcription elongation factor GreA n=2 Tax=Clostridium tetani RepID=Q899G8_CLOTE
GreA/GreB family elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=661478 species="Bacteria
SCNpilot_expt_300_bf_scaffold_1087_21
unknown

Not on your lists

16449..17156
DNA (708bp) protein (236aa)

This feature has no annotations

Displaying 21 items

View Taxonomy