ggKbase home page

SCNpilot_expt_300_bf_scaffold_508

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_508_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3..713
DNA (711bp) protein (237aa)
S-layer domain protein
S-layer domain protein {ECO:0000313|EMBL:AIE85199.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginseng
SCNpilot_expt_300_bf_scaffold_508_2
unknown

Not on your lists

899..1531
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_508_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


1564..2862
DNA (1299bp) protein (433aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
histidyl-tRNA synthetase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036E485A rbh
histidyl-tRNA synthetase
SCNpilot_expt_300_bf_scaffold_508_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

2864..3688
DNA (825bp) protein (275aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE83867.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
SCNpilot_expt_300_bf_scaffold_508_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3758..4483
DNA (726bp) protein (242aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
Uridylate kinase n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VMP3_9DELT
Uridylate kinase
SCNpilot_expt_300_bf_scaffold_508_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

4484..5044
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QXY2_SPHPG
ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=661478 species="Bacteria;
SCNpilot_expt_300_bf_scaffold_508_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

5157..5924
DNA (768bp) protein (256aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonada
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B5262D
Di-trans,poly-cis-decaprenylcistransferase
SCNpilot_expt_300_bf_scaffold_508_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


6038..7855
DNA (1818bp) protein (606aa)
Aspartate--tRNA ligase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYU3_9BACT rbh
aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AIE86742.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginse
SCNpilot_expt_300_bf_scaffold_508_9
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7901..8374)
DNA (474bp) protein (158aa)
Response regulator n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A252_PELCD
Response regulator {ECO:0000313|EMBL:ABA89555.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicu
response regulator
SCNpilot_expt_300_bf_scaffold_508_10
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8496..9191
DNA (696bp) protein (232aa)
WD40-like Beta Propeller n=1 Tax=Bacillus cereus R309803 RepID=C2Q875_BACCE
WD40-like Beta Propeller {ECO:0000313|EMBL:EEK80289.1}; TaxID=526968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus R309803
periplasmic component of the Tol biopolymer transport system
SCNpilot_expt_300_bf_scaffold_508_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(9231..9650)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAR7_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE85187.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
SCNpilot_expt_300_bf_scaffold_508_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9819..10550
DNA (732bp) protein (244aa)
manganese/iron superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=14632549 bin=bin9_gal15 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin9_gal15 organism_group=GAL15
Superoxide dismutase
Superoxide dismutase {ECO:0000313|EMBL:AIE87945.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengis
SCNpilot_expt_300_bf_scaffold_508_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(10612..11283)
DNA (672bp) protein (224aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE83558.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
SCNpilot_expt_300_bf_scaffold_508_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(11304..12803)
DNA (1500bp) protein (500aa)
Hemolysins and related proteins containing CBS domains n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EU59_9BACT
Magnesium and cobalt efflux protein CorC
Magnesium and cobalt efflux protein CorC {ECO:0000313|EMBL:AIE83559.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fi
SCNpilot_expt_300_bf_scaffold_508_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(12824..13540)
DNA (717bp) protein (239aa)
Diacylglycerol kinase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETG7_9BACT
pa-phosphatase-like phosphoesterase
Pa-phosphatase-like phosphoesterase {ECO:0000313|EMBL:AIE83560.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbrii
SCNpilot_expt_300_bf_scaffold_508_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(13537..14091)
DNA (555bp) protein (185aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=661478 species="Bacteria; Ar
Endoribonuclease YbeY n=1 Tax=Clostridium ultunense Esp RepID=M1YZP3_9CLOT
Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly
SCNpilot_expt_300_bf_scaffold_508_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

14509..14829
DNA (321bp) protein (107aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE83865.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
SCNpilot_expt_300_bf_scaffold_508_18
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14795..15382)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002F7C488
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AFY45702.1}; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
SCNpilot_expt_300_bf_scaffold_508_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

15406..16101
DNA (696bp) protein (232aa)
phospholipase/carboxylesterase
Phospholipase/carboxylesterase {ECO:0000313|EMBL:AIE85477.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
Putative peptidase id=4218710 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
SCNpilot_expt_300_bf_scaffold_508_20
unknown

Not on your lists

16169..16552
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_508_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(16611..17897)
DNA (1287bp) protein (429aa)
RIP metalloprotease RseP n=1 Tax=Enterococcus casseliflavus 14-MB-W-14 RepID=S4AS42_ENTCA
putative membrane-associated zinc metalloprotease rbh
Putative membrane-associated zinc metalloprotease {ECO:0000313|EMBL:AIE83459.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" s
SCNpilot_expt_300_bf_scaffold_508_22
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(17911..19032)
DNA (1122bp) protein (374aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thermincola potens (strain JR) RepID=D5XF01_THEPJ
1-deoxy-D-xylulose 5-phosphate reductoisomerase rbh
SCNpilot_expt_300_bf_scaffold_508_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

19065..20579
DNA (1515bp) protein (505aa)
Diaminopimelate decarboxylase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWU0_9BACT rbh
diaminopimelate decarboxylase
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
SCNpilot_expt_300_bf_scaffold_508_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

20581..21246
DNA (666bp) protein (222aa)
Peptidase M50 n=1 Tax=uncultured bacterium RepID=K2DLK6_9BACT
membrane metalloprotease
Membrane metalloprotease {ECO:0000313|EMBL:AIE83452.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginse
SCNpilot_expt_300_bf_scaffold_508_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

21251..22246
DNA (996bp) protein (332aa)
Tryptophan--tRNA ligase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0F025_9BACT rbh
tryptophanyl-tRNA synthetase
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:AIE83451.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_508_26
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

22287..23081
DNA (795bp) protein (265aa)
HAD-superfamily hydrolase, subfamily IA n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRS4_9BACT
HAD-superfamily hydrolase, subfamily IA, variant 1
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:AIE83448.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;"
SCNpilot_expt_300_bf_scaffold_508_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23193..24095
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036B6969
PEP motif putative anchor domain protein
PEP motif putative anchor domain protein {ECO:0000313|EMBL:AHG87798.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCNpilot_expt_300_bf_scaffold_508_28
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(24167..24898)
DNA (732bp) protein (244aa)
succinate dehydrogenase cytochrome B558 n=1 Tax=Caldibacillus debilis RepID=UPI000381FE0E
succinate dehydrogenase cytochrome b558 subunit
Succinate dehydrogenase cytochrome b558 subunit {ECO:0000313|EMBL:AIE87406.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" sou
SCNpilot_expt_300_bf_scaffold_508_29
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

25035..26333
DNA (1299bp) protein (433aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
Enolase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=ENO_METRJ
enolase
SCNpilot_expt_300_bf_scaffold_508_30
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(27282..27863)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VDX1_9DELT
intracellular protease, PfpI family
Intracellular protease, PfpI family {ECO:0000313|EMBL:AIE88065.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbrii
Displaying items 1-30 of 88 in total

View Taxonomy