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SCNpilot_expt_300_bf_scaffold_524

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_524_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(1..303)
DNA (303bp) protein (101aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SDR1_9ZZZZ
ABC-type transport system, permease component
ABC-type transport system, permease component {ECO:0000313|EMBL:AIE87141.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" sourc
SCNpilot_expt_300_bf_scaffold_524_2
unknown

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comp(1399..2187)
DNA (789bp) protein (263aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_524_3
unknown

Not on your lists

comp(2407..2778)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_524_4
unknown

Not on your lists

comp(2920..3396)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_524_5
R_OD1_Yanofskybacteria_39_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

3894..4415
DNA (522bp) protein (174aa)
cytidyltransferase-related enzyme Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_39_10_curated
Putative transcriptional regulatory protein NadR (Probably AsnC-family) id=2994504 bin=GWC2_Nitrospirae-rel_56_14 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
transcriptional regulator NadR
SCNpilot_expt_300_bf_scaffold_524_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(4489..5082)
DNA (594bp) protein (198aa)
50S ribosomal protein L5 n=1 Tax=uncultured prokaryote RepID=H5SJZ3_9ZZZZ
ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_524_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(5130..5534)
DNA (405bp) protein (135aa)
50S ribosomal protein L24 n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8ILG1_ALIAT
ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_524_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(5534..5905)
DNA (372bp) protein (124aa)
50S ribosomal protein L14 n=1 Tax=uncultured prokaryote RepID=H5SJZ1_9ZZZZ
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbri
SCNpilot_expt_300_bf_scaffold_524_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(5994..6266)
DNA (273bp) protein (91aa)
30S ribosomal protein S17 n=1 Tax=Streptomyces scabrisporus RepID=UPI00037274AF
30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbri
SCNpilot_expt_300_bf_scaffold_524_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(6266..6472)
DNA (207bp) protein (69aa)
50S ribosomal protein L29 n=1 Tax=uncultured prokaryote RepID=H5SJY9_9ZZZZ
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_524_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(6480..6941)
DNA (462bp) protein (154aa)
50S ribosomal protein L16 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RL16_ALKOO
LSU ribosomal protein L16P
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbri
SCNpilot_expt_300_bf_scaffold_524_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(6941..7765)
DNA (825bp) protein (275aa)
30S ribosomal protein S3 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKI0_DESK7
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_524_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(7768..8349)
DNA (582bp) protein (194aa)
50S ribosomal protein L22 n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZW1_9BACT
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbri
SCNpilot_expt_300_bf_scaffold_524_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(8459..8746)
DNA (288bp) protein (96aa)
30S ribosomal protein S19 n=1 Tax=Clostridium ultunense Esp RepID=M1Z6W3_9CLOT
30S ribosomal protein s19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_524_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(8863..9693)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LST8_TEPAE rbh
ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_524_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(9695..10039)
DNA (345bp) protein (115aa)
LSU ribosomal protein L23P
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_524_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(10036..10707)
DNA (672bp) protein (224aa)
50S ribosomal protein L4 n=1 Tax=uncultured prokaryote RepID=H5SJY2_9ZZZZ
LSU ribosomal protein L4p (L1e)
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_524_18
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(10713..11339)
DNA (627bp) protein (209aa)
50S ribosomal protein L3 n=1 Tax=Thermincola potens (strain JR) RepID=D5X9W1_THEPJ
50S ribosomal protein l3
50S ribosomal protein l3 {ECO:0000313|EMBL:AIE87137.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginse
SCNpilot_expt_300_bf_scaffold_524_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(11684..12088)
DNA (405bp) protein (135aa)
ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=14631252 bin=bin9_gal15 species=unknown genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
SCNpilot_expt_300_bf_scaffold_524_20
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12105..12761)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000367B6D0
id=2536535 Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_300_bf_scaffold_524_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(12835..14052)
DNA (1218bp) protein (406aa)
Elongation factor Tu n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2Y7_MAHA5
translation elongation factor tu rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia;
SCNpilot_expt_300_bf_scaffold_524_22
unknown

Not on your lists

14344..14868
DNA (525bp) protein (175aa)
hypothetical protein
SCNpilot_expt_300_bf_scaffold_524_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14997..17132)
DNA (2136bp) protein (712aa)
Elongation factor G n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZK9_THEOJ
translation elongation factor 2 (EF-2/EF-G)
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadace
SCNpilot_expt_300_bf_scaffold_524_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(17494..17964)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B3469F
ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas g
SCNpilot_expt_300_bf_scaffold_524_25
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17987..18373)
DNA (387bp) protein (129aa)
30S ribosomal protein S12 n=1 Tax=Caloramator australicus RC3 RepID=I7K9A8_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source
30S ribosomal protein S12
SCNpilot_expt_300_bf_scaffold_524_26
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

18754..19317
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0C0_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL98707.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
SCNpilot_expt_300_bf_scaffold_524_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

19425..21023
DNA (1599bp) protein (533aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYZ4_9BACT rbh
Lysyl-tRNA synthetase (class II)
SCNpilot_expt_300_bf_scaffold_524_28
unknown

Not on your lists

21142..21654
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_524_29
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22091..23233)
DNA (1143bp) protein (381aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116, ECO:0000313|EMBL:AEW22557.1};; TaxID=203275 species="Bacteria; Bacteroi
Carbamoyl-phosphate synthase, large subunit n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UHY5_TANFA
carB; carbamoyl-phosphate synthase large subunit
SCNpilot_expt_300_bf_scaffold_524_30
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23319..24125
DNA (807bp) protein (269aa)
hprA; glycerate dehydrogenase HprA (EC:1.1.1.29)
Glycerate dehydrogenase HprA {ECO:0000313|EMBL:AGC67349.1}; EC=1.1.1.29 {ECO:0000313|EMBL:AGC67349.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminic
Glycerate dehydrogenase HprA n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VL03_CLOSH
Displaying 30 items

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