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SCNpilot_expt_300_bf_scaffold_828

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_828_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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2..430
DNA (429bp) protein (143aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriim
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ESI5_9BACT
glycine dehydrogenase subunit 2
SCNpilot_expt_300_bf_scaffold_828_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

452..1246
DNA (795bp) protein (265aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=661478 species="Bacteria; Armat
Glutamate racemase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MDT2_9PORP id=2622 bin=ACD11 species=Porphyromonas uenonis genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
glutamate racemase
SCNpilot_expt_300_bf_scaffold_828_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

1433..2383
DNA (951bp) protein (317aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=661478 species="Bacteria; Armatim
alr; alanine racemase; K01775 alanine racemase [EC:5.1.1.1] id=88331 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i rbh
alanine racemase
SCNpilot_expt_300_bf_scaffold_828_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

2380..3030
DNA (651bp) protein (217aa)
biotin/lipoate A/B protein ligase family protein
Biotin/lipoate A/B protein ligase family protein {ECO:0000313|EMBL:AIE87448.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" so
SCNpilot_expt_300_bf_scaffold_828_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3023..3535
DNA (513bp) protein (171aa)
Large-conductance mechanosensitive channel n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=MSCL_GEODF
Large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriim
SCNpilot_expt_300_bf_scaffold_828_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(3596..4699)
DNA (1104bp) protein (368aa)
RNA polymerase sigma factor n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYQ6_9BACT rbh
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas
SCNpilot_expt_300_bf_scaffold_828_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(5005..6060)
DNA (1056bp) protein (352aa)
Cysteine desulfurase NifS n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K431_DEHLB
cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:AIE87442.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengis
SCNpilot_expt_300_bf_scaffold_828_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(6148..7035)
DNA (888bp) protein (296aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimo
Succinyl-CoA synthetase alpha subunit n=1 Tax=uncultured prokaryote RepID=H5S9J6_9ZZZZ rbh
succinyl-CoA synthetase, alpha subunit
SCNpilot_expt_300_bf_scaffold_828_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

7624..8229
DNA (606bp) protein (202aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M292_9CLOT
imidazoleglycerol-phosphate dehydratase
SCNpilot_expt_300_bf_scaffold_828_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

8226..8816
DNA (591bp) protein (197aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TE26_9CLOT
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
SCNpilot_expt_300_bf_scaffold_828_11
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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8810..9529
DNA (720bp) protein (240aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Anoxybacillus flavithermus (strain DSM 21510 / WK1) RepID=B7GL46_ANOFW
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
SCNpilot_expt_300_bf_scaffold_828_12
unknown

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9576..9875
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_828_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

10044..14063
DNA (4020bp) protein (1340aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W244_DESIS
DNA-directed RNA polymerase subunit beta
SCNpilot_expt_300_bf_scaffold_828_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

14156..16162
DNA (2007bp) protein (669aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX29_9BACT
DNA-directed RNA polymerase subunit beta'
SCNpilot_expt_300_bf_scaffold_828_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

16300..17385
DNA (1086bp) protein (362aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX29_9BACT
DNA-directed RNA polymerase subunit beta'
SCNpilot_expt_300_bf_scaffold_828_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

18142..18693
DNA (552bp) protein (184aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EX29_9BACT
DNA-directed RNA polymerase subunit beta'
SCNpilot_expt_300_bf_scaffold_828_17
unknown

Not on your lists

18731..18958
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_828_18
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

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comp(18955..19776)
DNA (822bp) protein (274aa)
probable lipase/esterase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4088
Uncharacterized protein {ECO:0000313|EMBL:BAL60104.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
Esterase/lipase
SCNpilot_expt_300_bf_scaffold_828_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(19803..20207)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B3B010
HspR, transcriptional repressor of DnaK operon
HspR, transcriptional repressor of DnaK operon {ECO:0000313|EMBL:AIE86847.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" sour
SCNpilot_expt_300_bf_scaffold_828_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(20204..21118)
DNA (915bp) protein (305aa)
molecular chaperone DnaJ n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B41AAA
Chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000313|EMBL:AIE86848.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginseng
SCNpilot_expt_300_bf_scaffold_828_21
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21228..21581
DNA (354bp) protein (118aa)
Metal-dependent phosphohydrolase, HD subdomain id=3472733 bin=GWF2_Lentisphaerae_52_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Metal dependent phosphohydrolase Tax=S_Thermoanaerobacterales_50_218
diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_300_bf_scaffold_828_22
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21578..22039
DNA (462bp) protein (154aa)
metal dependent phosphohydrolase Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
Metal dependent phosphohydrolase id=3926158 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
metal dependent phosphohydrolase
SCNpilot_expt_300_bf_scaffold_828_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(22073..24145)
DNA (2073bp) protein (691aa)
Elongation factor EF-G n=1 Tax=uncultured prokaryote RepID=H5SJZ4_9ZZZZ rbh
translation elongation factor G
Translation elongation factor G {ECO:0000313|EMBL:AIE87970.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimona
SCNpilot_expt_300_bf_scaffold_828_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

24366..25130
DNA (765bp) protein (255aa)
Transcriptional regulator, LacI family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZX7_9BACT
ThuR, regulatory protein for trehalosemaltose transport system
ThuR, regulatory protein for trehalosemaltose transport system {ECO:0000313|EMBL:AIE84821.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimb
Displaying 24 items

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