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SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 4.61 Longest contig: 15.36 Kbp Bin length: 6.58 Mbp GC content: 32.61 %
Contigs count: 993 Features count: 7781 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3

Description

from TS-ESOM

Displaying items 51-100 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_3964 14 7030 bp 33.74 3.64 61.88
SCNpilot_expt_300_bf_scaffold_5476
Domain: Metazoa (57.14%)
14 8390 bp 34.12 3.62 40.83
SCNpilot_expt_300_bf_scaffold_2785 13 8619 bp 34.08 3.84 53.25
SCNpilot_expt_300_bf_scaffold_6009 13 5833 bp 31.68 4.69 59.66
SCNpilot_expt_300_bf_scaffold_1262
Domain: Metazoa (53.85%)
13 10170 bp 33.86 4.44 54.34
SCNpilot_expt_300_bf_scaffold_3726 13 9883 bp 32.73 4.32 51.76
SCNpilot_expt_300_bf_scaffold_2032 13 9144 bp 31.96 4.47 41.04
SCNpilot_expt_300_bf_scaffold_1779 13 11784 bp 34.15 4.43 40.81
SCNpilot_expt_300_bf_scaffold_7925 13 7191 bp 33.58 4.08 67.04
SCNpilot_expt_300_bf_scaffold_4112 13 9403 bp 33.31 3.82 41.35
SCNpilot_expt_300_bf_scaffold_3742
Domain: Metazoa (61.54%)
13 5747 bp 34.19 4.28 55.02
SCNpilot_expt_300_bf_scaffold_4385 13 7948 bp 33.56 3.63 50.69
SCNpilot_expt_300_bf_scaffold_2061 13 9321 bp 31.55 4.23 30.19
SCNpilot_expt_300_bf_scaffold_1808 13 6157 bp 30.53 4.00 52.82
SCNpilot_expt_300_bf_scaffold_1045 13 9232 bp 33.80 4.02 51.18
SCNpilot_expt_300_bf_scaffold_8649 13 9243 bp 32.60 3.75 44.11
SCNpilot_expt_300_bf_scaffold_4673 13 6500 bp 35.29 3.48 60.92
SCNpilot_expt_300_bf_scaffold_5041 13 5948 bp 32.31 3.71 64.96
SCNpilot_expt_300_bf_scaffold_7213
Domain: Metazoa (53.85%)
13 11907 bp 33.28 3.75 49.06
SCNpilot_expt_300_bf_scaffold_5336 13 7828 bp 33.00 4.23 65.99
SCNpilot_expt_300_bf_scaffold_4460 13 5526 bp 32.61 3.63 62.98
SCNpilot_expt_300_bf_scaffold_3068 13 11059 bp 34.53 4.36 46.93
SCNpilot_expt_300_bf_scaffold_1630
Domain: Metazoa (69.23%)
13 7692 bp 34.89 4.01 52.54
SCNpilot_expt_300_bf_scaffold_2654 13 6875 bp 31.99 4.56 54.15
SCNpilot_expt_300_bf_scaffold_9974 13 6296 bp 31.80 4.43 50.27
SCNpilot_expt_300_bf_scaffold_6140 13 7748 bp 36.00 4.54 61.91
SCNpilot_expt_300_bf_scaffold_1647 13 8671 bp 33.39 4.20 60.03
SCNpilot_expt_300_bf_scaffold_3864 13 9595 bp 35.06 3.71 63.28
SCNpilot_expt_300_bf_scaffold_3610 13 9867 bp 34.98 4.30 48.28
SCNpilot_expt_300_bf_scaffold_1660
Domain: Metazoa (84.62%)
13 6809 bp 32.94 3.91 51.68
SCNpilot_expt_300_bf_scaffold_2185 13 6097 bp 33.69 3.95 47.53
SCNpilot_expt_300_bf_scaffold_1421
Order: Poales (53.85%)
13 7438 bp 34.28 4.42 79.13
SCNpilot_expt_300_bf_scaffold_4538 13 5837 bp 33.08 4.43 50.57
SCNpilot_expt_300_bf_scaffold_1445 13 7480 bp 33.80 3.89 50.49
SCNpilot_expt_300_bf_scaffold_1449
Domain: Metazoa (92.31%)
13 7045 bp 34.11 3.71 82.53
SCNpilot_expt_300_bf_scaffold_2217 13 11683 bp 30.94 3.82 30.17
SCNpilot_expt_300_bf_scaffold_2480 13 9306 bp 30.82 4.83 49.32
SCNpilot_expt_300_bf_scaffold_1201 13 8212 bp 34.49 4.65 43.36
SCNpilot_expt_300_bf_scaffold_1973 13 7559 bp 35.38 3.72 58.62
SCNpilot_expt_300_bf_scaffold_7361 13 8970 bp 33.91 4.34 51.27
SCNpilot_expt_300_bf_scaffold_4058 13 6892 bp 31.91 6.74 75.65
SCNpilot_expt_300_bf_scaffold_4334 13 5974 bp 31.57 3.82 52.28
SCNpilot_expt_300_bf_scaffold_2564
Domain: Metazoa (50%)
12 6535 bp 34.11 3.50 46.78
SCNpilot_expt_300_bf_scaffold_2567 12 7963 bp 32.49 3.81 47.21
SCNpilot_expt_300_bf_scaffold_2571 12 10005 bp 31.32 4.72 43.30
SCNpilot_expt_300_bf_scaffold_2330
Domain: Metazoa (58.33%)
12 6961 bp 31.68 4.54 47.19
SCNpilot_expt_300_bf_scaffold_877 12 10096 bp 31.85 4.60 38.24
SCNpilot_expt_300_bf_scaffold_6326 12 6278 bp 31.32 4.20 48.89
SCNpilot_expt_300_bf_scaffold_2601 12 8524 bp 30.54 4.83 70.11
SCNpilot_expt_300_bf_scaffold_1837 12 8630 bp 31.91 3.98 40.36
Displaying items 51-100 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.