ggKbase home page

SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Description

from TS-ESOM

Displaying items 151-200 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_3549
Domain: Metazoa (63.64%)
11 6422 bp 34.35 3.56 52.79
SCNpilot_expt_300_bf_scaffold_3043
Domain: Metazoa (72.73%)
11 7722 bp 32.35 4.88 48.21
SCNpilot_expt_300_bf_scaffold_3555 11 5880 bp 32.40 4.01 52.70
SCNpilot_expt_300_bf_scaffold_2124 11 8730 bp 32.97 4.34 41.92
SCNpilot_expt_300_bf_scaffold_4198 11 5612 bp 35.58 4.83 70.19
SCNpilot_expt_300_bf_scaffold_1884
Domain: Metazoa (63.64%)
11 5334 bp 32.98 4.00 50.90
SCNpilot_expt_300_bf_scaffold_2663
Domain: Metazoa (54.55%)
11 6613 bp 33.62 4.44 40.10
SCNpilot_expt_300_bf_scaffold_5112 11 6548 bp 31.55 3.91 46.23
SCNpilot_expt_300_bf_scaffold_1409 11 7383 bp 33.59 4.66 38.52
SCNpilot_expt_300_bf_scaffold_1429 11 10085 bp 31.36 4.33 35.79
SCNpilot_expt_300_bf_scaffold_2206
Domain: Metazoa (81.82%)
11 5463 bp 34.19 4.14 62.66
SCNpilot_expt_300_bf_scaffold_4797 11 7264 bp 31.88 4.49 49.11
SCNpilot_expt_300_bf_scaffold_1967 11 9614 bp 31.80 4.15 37.91
SCNpilot_expt_300_bf_scaffold_2231 11 8604 bp 31.06 4.26 65.45
SCNpilot_expt_300_bf_scaffold_5444 11 8003 bp 33.64 4.30 52.18
SCNpilot_expt_300_bf_scaffold_2493 11 7530 bp 31.16 4.87 49.84
SCNpilot_expt_300_bf_scaffold_3422 11 8200 bp 32.74 3.92 53.67
SCNpilot_expt_300_bf_scaffold_7873 11 5554 bp 34.30 4.11 79.94
SCNpilot_expt_300_bf_scaffold_6993
Domain: Metazoa (54.55%)
11 5940 bp 31.40 3.76 50.56
SCNpilot_expt_300_bf_scaffold_1735
Species: Adineta vaga (72.73%)
11 5621 bp 33.09 4.38 62.60
SCNpilot_expt_300_bf_scaffold_1742 11 5615 bp 31.63 4.47 74.11
SCNpilot_expt_300_bf_scaffold_4839 11 6419 bp 33.65 3.68 56.18
SCNpilot_expt_300_bf_scaffold_4076 11 9284 bp 33.43 4.00 61.43
SCNpilot_expt_300_bf_scaffold_3189 11 6151 bp 31.80 3.88 79.06
SCNpilot_expt_300_bf_scaffold_6503 11 5798 bp 34.51 3.38 60.64
SCNpilot_expt_300_bf_scaffold_2264 11 6710 bp 30.52 5.12 48.91
SCNpilot_expt_300_bf_scaffold_8570 11 8506 bp 33.89 4.07 40.88
SCNpilot_expt_300_bf_scaffold_1244 11 9374 bp 37.43 3.96 34.28
SCNpilot_expt_300_bf_scaffold_3709 11 7291 bp 32.90 5.71 60.16
SCNpilot_expt_300_bf_scaffold_1504 11 8053 bp 31.06 3.68 50.25
SCNpilot_expt_300_bf_scaffold_1762 10 5569 bp 32.86 4.28 58.18
SCNpilot_expt_300_bf_scaffold_3715 10 5658 bp 31.92 3.95 50.00
SCNpilot_expt_300_bf_scaffold_3207 10 7743 bp 34.84 4.28 39.25
SCNpilot_expt_300_bf_scaffold_4866 10 6004 bp 34.18 4.64 50.12
SCNpilot_expt_300_bf_scaffold_1261 10 10467 bp 31.31 4.29 42.48
SCNpilot_expt_300_bf_scaffold_1518
Domain: Metazoa (60%)
10 6183 bp 32.22 3.45 74.04
SCNpilot_expt_300_bf_scaffold_3217 10 5774 bp 31.35 4.26 53.83
SCNpilot_expt_300_bf_scaffold_1528
Domain: Metazoa (60%)
10 8564 bp 34.48 4.45 61.48
SCNpilot_expt_300_bf_scaffold_10107 10 6744 bp 33.13 4.13 46.44
SCNpilot_expt_300_bf_scaffold_8861
Domain: Metazoa (50%)
10 6713 bp 31.63 4.04 34.86
SCNpilot_expt_300_bf_scaffold_1538 10 6126 bp 31.98 4.71 65.13
SCNpilot_expt_300_bf_scaffold_1795
Domain: Metazoa (70%)
10 5512 bp 30.59 5.15 53.23
SCNpilot_expt_300_bf_scaffold_1540 10 8966 bp 30.04 3.56 23.05
SCNpilot_expt_300_bf_scaffold_11709
Domain: Metazoa (50%)
10 5926 bp 32.21 3.81 40.30
SCNpilot_expt_300_bf_scaffold_8876 10 6691 bp 33.43 3.94 88.19
SCNpilot_expt_300_bf_scaffold_2326
Domain: Metazoa (60%)
10 6790 bp 33.84 4.66 66.05
SCNpilot_expt_300_bf_scaffold_1308 10 6916 bp 33.17 3.96 71.96
SCNpilot_expt_300_bf_scaffold_1053 10 8349 bp 30.75 6.25 51.56
SCNpilot_expt_300_bf_scaffold_1567 10 6029 bp 33.16 4.08 45.58
SCNpilot_expt_300_bf_scaffold_2079
Domain: Metazoa (60%)
10 5001 bp 33.91 4.02 57.29
Displaying items 151-200 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.